Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00466 ATGGCGAGCGGATTCGGGGAATCAACAAGTAGGCAACCTCAAAGCCCTTCGTGTTCCGACAACAACGGTGATGCTAGTAATTTTGAGTGTAATATTTGCCTGGATTTAGCTCAAGATCCTATTGTAACCCTATGTGGTCATCTTTTTTGTTGGCCATGCCTTTACAAGTGGCTGCACATTCATTCCCATCCCCAGGAATGTCCAGTTTGTAAAGCTATGATAGAAGAGCAAAAATTGGTTCCCTTATATGGTAGGGGAAAGACGTCGACTGACCCGAGGTCGAAAAGTATTCCGGGAGTTAATATTCCTAATCGTCCTGCGGGACAGAGACCTGAAGCAGCAGGCCCTCCCCCAGAGCCAAATCCTTTTGCTCACAATGGATTTGGATTCATGGGAGGTCTTGGAGGGTTTGCTCCAATGGCATCAACAAGGTTTGGTAATTTCACATTGTCTGCGGCTTTTGGTGGTCTTGTCCCATCTTTGTTCAACTTTCAGATGCATGGATATGCAGATCCAAGCATGTATGGTGCAGGTGCTAACTTTCCATATGGGTTTCCTAACATGTTTCATGGTAGCCATGGCCATGGCCATGCTCATGCTCATGGATACTATCACCATCTCCGTCAAGGTCAGCAAGATTACTACCTGAAGCGGCTGCTTTTTTTTATTGGTTTCTGTAAGTTCAGAATATACAGATGGGTTTCTGCTGCACATGGTACTACCAGAAACTTGTTCATCAGATTTTGTTTAGCTATGTCTTGCACTAGGTTCGTGAAATACGTCGTTCTGATCGAAGAGCAGGACAAGGATCAGGATCATCACCCCTTGATACCATGTTGGGAACTAGTAGGGAATGACCTAACAGAAGCAGACTCCATGAGAGGTCATTCGGAAGGACTCCGAATAGTTCGATTTTGGGGTATGAGCTCGTTGTTGTTGTTGGAATATTTTCTGAAACCCCATTTGAAAGCTAAAGCTACTCACCACCGGCCGGTCACCATCTCTCTCATTCTCACCTTACACATAAAAACCCATCTCTTACCTTTCCTCCTTCCTCACTTCCTCTCGCCGGCCGCCGCCATGTTTAAACCTCCGGCCGCTCTTCTCTTCTTCATTTTCTCCTTAACTGCCGTCAATGCCACCGTTCTATTCAAGGAGGCACCCCAATTCTACAACTCCCCTGACTGCCCCTCTGTTTTCGAGGGTGAGGAAGATGGCCATCGTCTCTGCTCCGACGATGGCGTCCACGTTGCGATGACATTGGACACGGCTTACATCCGGGGCTCCATGGCGGCGATCCTCTCCGTTCTGCAACATTCATCCTGTCCCCAAAATGTAATCTTCCATTTTGTTTCCTCTGCTTCTGCAAATGCTCTGTCTCTCCACGCCACCATTTCCTCCTCCTTTCCTTATCTTAAATTCAAAATCTACCCCTTCGACGATGTCGCCGTGTCCCGTTTGATCTCCACCTCCATCCGCTCTGCCTTGGATTGTCCATTGAACTATGCTCGTAGCTACTTGGCTGACCTCCTCCCCCTCTGCGTTCGCCGTGTTGTCTATCTCGATTCCGATATAATCCTCGTCGACGACATCGCTAACCTCGCCAACACTCCTCTTAACGACGCCGTCCTCGCTGCCCCTGAGTACTGCAACGCCAATTTCACGGCCTATTTCACTCCCACTTTCTGGTCCAATCCCTCTCTCTCTCTCACCTTCGCCAATCGCAAACCCTGTTACTTCAATACCGGTGTCATGGTCATCGACCTCTCCCGGTGGCGCCTCGGCGACTTCACCGCCGAAATCGAAGAATGGATGGAGCTTCAGAAGAGAATGAGGATCTACGAGCTTGGATCTCTACCGCCATTCATGCTTGTTTTCGCTGGAAACATCGCCCCTGTCGACCACCGGTGGAACCAGCACGGCCTCGGCGGGGATAATTTCCGGGGACTCTGCCGGGATCTACACCCGGGTCCGGTGAGCCTGTTGCATTGGAGTGGAAAGGGGAAGCCATGGGCCCGAGTGGATGCGAACCGGCCGTGTCCGTTGGACTCTCTGTGGGTCCCTTATGATCTGTTGCTGACTCCATTTTCGTTGGATTCA 2100 49.9 MASGFGESTSRQPQSPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHIHSHPQECPVCKAMIEEQKLVPLYGRGKTSTDPRSKSIPGVNIPNRPAGQRPEAAGPPPEPNPFAHNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMYGAGANFPYGFPNMFHGSHGHGHAHAHGYYHHLRQGQQDYYLKRLLFFIGFCKFRIYRWVSAAHGTTRNLFIRFCLAMSCTRFVKYVVLIEEQDKDQDHHPLIPCWELVGNDLTEADSMRGHSEGLRIVRFWGMSSLLLLEYFLKPHLKAKATHHRPVTISLILTLHIKTHLLPFLLPHFLSPAAAMFKPPAALLFFIFSLTAVNATVLFKEAPQFYNSPDCPSVFEGEEDGHRLCSDDGVHVAMTLDTAYIRGSMAAILSVLQHSSCPQNVIFHFVSSASANALSLHATISSSFPYLKFKIYPFDDVAVSRLISTSIRSALDCPLNYARSYLADLLPLCVRRVVYLDSDIILVDDIANLANTPLNDAVLAAPEYCNANFTAYFTPTFWSNPSLSLTFANRKPCYFNTGVMVIDLSRWRLGDFTAEIEEWMELQKRMRIYELGSLPPFMLVFAGNIAPVDHRWNQHGLGGDNFRGLCRDLHPGPVSLLHWSGKGKPWARVDANRPCPLDSLWVPYDLLLTPFSLDS 700
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2941124 2944812 + Carg04074-RA Car12g00466 158082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00466 700 MobiDBLite consensus disorder prediction 84 121 - -
Car12g00466 700 Pfam Zinc finger, C3HC4 type (RING finger) 27 76 - -
Car12g00466 700 MobiDBLite consensus disorder prediction 1 20 - -
Car12g00466 700 Pfam Glycosyl transferase family 8 416 673 IPR002495 GO:0016757
Car12g00466 700 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
Car12g00466 700 ProSiteProfiles Zinc finger RING-type profile. 30 71 IPR001841 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car05g00179 Car12g00466 CCT
Car09g00157 Car12g00466 CCT
Car05g00179 Car12g00466 ECH
Car09g00157 Car12g00466 ECH
Car01g01471 Car12g00466 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00926 Car-Chr3:7272959 Car12g00466 Car-Chr12:2941124 9.51E-68 dispersed
Car05g00180 Car-Chr5:958231 Car12g00466 Car-Chr12:2941124 4.09E-124 dispersed
Car06g00088 Car-Chr6:608594 Car12g00466 Car-Chr12:2941124 8.09E-28 dispersed
Car07g00739 Car-Chr7:3812415 Car12g00466 Car-Chr12:2941124 2.07E-66 dispersed
Car12g00466 Car-Chr12:2941124 Car17g01007 Car-Chr17:8010674 6.14E-134 dispersed
Car13g00532 Car-Chr13:7308863 Car12g00466 Car-Chr12:2941124 3.11E-25 dispersed
Car14g00377 Car-Chr14:1896660 Car12g00466 Car-Chr12:2941124 1.45E-27 dispersed
Car14g00934 Car-Chr14:5640241 Car12g00466 Car-Chr12:2941124 8.23E-23 dispersed
Car01g01471 Car-Chr1:12580917 Car12g00466 Car-Chr12:2941124 0 wgd
Car12g00466 Car-Chr12:2941124 Car03g00925 Car-Chr3:7268186 0 wgd
Car12g00466 Car-Chr12:2941124 Car05g00179 Car-Chr5:954364 0 wgd
Car12g00466 Car-Chr12:2941124 Car07g00738 Car-Chr7:3808565 1.44E-180 wgd
Car12g00466 Car-Chr12:2941124 Car09g00157 Car-Chr9:747771 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00466 K20893 - csv:101218422 637.106