Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00472 ATGTTAAGAATCATTCCCTGTTTTCCGTTCCACTTGCTTCAGCTCCACACTTTCTCAGATGCCGAGAAAATTCATCACTTTCCCGGAAAATCTCAGCCAAACACCAACATTTTCTCGCCCTTTTCAACTCTTCCATCTATGATCTCCAAAACCCAGTTCTTGAATTTCCCAATTTTCCTTTTGGTTCTGATTTTGACGGCCAAAACAGAGGCAAAATGTTCAAAATCCTGCATTTCCGGCCACCTCCCCCACGATTTCCCTTACCCATTTGGCTTCTCCGCCGACTGCGCAATCCGGCTGAACTGCAGCCACGACGGCGCTGCCATGATCGGAGAATTCCCAGTTGAATCCATTAACTCCGATCATATCAAACTCGTAACCAAAGCCAAATGCAACCGCCGCCTCCACACAATCCGCCAATTCTTTAGCCATCACTACGCGCCGACTGTAAACAACGCCATTCTTTTACAAAACTGTTCTTCTCCGATTGCCACTTGTTTCTTACCGACGACGATGGTTCAGACCAAATTCGAATCCCCTCCCAATTGCTCTGTTAATCGCACTAGTATTAGCTGCTACACCCAGAACGCCACCGCCACCACCACCGCCACCGCCTCCGCCGGTTTCTTGGATTTCAAAAACCTCACCGCCACCAACTGCGACTACCTTCTGTCATCGATTTCAGCGGAGGCGCTCAACAGCAACGCCTCCGCTGGAATCTCTCTGGAAATTCAAACGTTGGAGCTCGGCTGGTGGCTTCCGGGGAGCTGCCGTGGTTCTTGTCATGTAGATGCTAACTGCACGGAGCTTCGGTCCCCGAGTAATGGGGAGCTGTCTCATCGGTGCCGATGCCGGGATGAGCTTGTCGGCGACGGATATTTGGCCGGCACCGGCTGCCGGAAAGCTTCTAATTGCTACACCACCAACTACATCATCGGCGAATGCAGAACCTCAACATCAGCCACAAGAACCGCCATCCTCATCGGAACCCTGATCGGCGTAGCCACCGTACTAGTTACTGTAATTTCATTCTGCTACTTCATCCGCCGTCATTCCAATCTCAAATCCACACACATCCACAAAATCACCAAACGTCGCCTCTCAGAAGCTACCGCCGGAAAATCCCCCATCCATATCTACACCTACAAAGAGATTCAAAAAGCCACCCAAAACTTCTCCGACGACCACCGCCTCGGAACCGGCGCCTACGCCACTGTCTACGCCGGAAAATTACGCAACGATAAATGGGTAGCTATCAAACGCCTCAAAAATCAAGACCCTGATACCATCCAACAAGTCCTTAACGAAATCAGTCTCATCTCCTCCGTCAGCCACCCGAACCTCGTCCGCCTCCTCGGCTGCTCCATGGAATCCGGTGACCAAATCCTCGTCTATGAATTCATGCCCAACGGCACTCTGTCACAACATTTACAAAAACAGAGAGGCGCCGGTCTCCCCTGGCCCGTCCGTTTAGACATCGCCGTCGAAACCGCCGACGCAATTGCCCATCTCCACTCTGCAATTAACCCACCGATCTTCCACCGAGACATCAAATCCAGCAATATTCTACTCGATCATAATCTCAAATCAAAAGTGGCGGATTTCGGGCTTTCAAGATTGGGGATGGCGGAAATTTCCCACATCTCGACGGCGCCGCAGGGGACGCCGGGGTATCTCGATCCACAGTACCATCAGGATTTTCATCTCTCCGACAAGAGCGACGTGTACAGCTTCGGCGTCGTTCTGGTAGAATTGATCACCGCCATGAAAGTGGTGGATTTCTGCCGCCCGAAAAACGAGGTCAATTTGGCAGCTCTGGCCGCCGATAGAATTGGGAATGGGCGGCTGAGGGAGATTGTGGATCCGTTGATTGAGATAGATAAAGATGAATGGAGGATTTCTTCGGTGGAAAAAGTGGGGGAGGTGGCGTTTAGATGCTTAGCGTTTCATAGGGATATGAGGCCGTCGATGGTGGAGGTCGCGGCGGAGCTGGATGAGATACGGCGGAGCCGGTGGGAAGAAGGCGGTTTGAAGTGTAAGGAAATGGGGTTAGTAGTTGAGAGTGAGAGCTCGAAATCGAGCCATGGAGGCGGAGATTACTTTTCTCGAGCCTCTGTTGAAGATTCATGGCGGAGTGAACAGAGCTCCCAGTCGTCGAGTAGTTTGTTAAATCATGTCATTTTATAA 2187 51.21 MLRIIPCFPFHLLQLHTFSDAEKIHHFPGKSQPNTNIFSPFSTLPSMISKTQFLNFPIFLLVLILTAKTEAKCSKSCISGHLPHDFPYPFGFSADCAIRLNCSHDGAAMIGEFPVESINSDHIKLVTKAKCNRRLHTIRQFFSHHYAPTVNNAILLQNCSSPIATCFLPTTMVQTKFESPPNCSVNRTSISCYTQNATATTTATASAGFLDFKNLTATNCDYLLSSISAEALNSNASAGISLEIQTLELGWWLPGSCRGSCHVDANCTELRSPSNGELSHRCRCRDELVGDGYLAGTGCRKASNCYTTNYIIGECRTSTSATRTAILIGTLIGVATVLVTVISFCYFIRRHSNLKSTHIHKITKRRLSEATAGKSPIHIYTYKEIQKATQNFSDDHRLGTGAYATVYAGKLRNDKWVAIKRLKNQDPDTIQQVLNEISLISSVSHPNLVRLLGCSMESGDQILVYEFMPNGTLSQHLQKQRGAGLPWPVRLDIAVETADAIAHLHSAINPPIFHRDIKSSNILLDHNLKSKVADFGLSRLGMAEISHISTAPQGTPGYLDPQYHQDFHLSDKSDVYSFGVVLVELITAMKVVDFCRPKNEVNLAALAADRIGNGRLREIVDPLIEIDKDEWRISSVEKVGEVAFRCLAFHRDMRPSMVEVAAELDEIRRSRWEEGGLKCKEMGLVVESESSKSSHGGGDYFSRASVEDSWRSEQSSQSSSSLLNHVIL 728
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2964459 2967480 - Carg04080-RA Car12g00472 158088

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00472 728 ProSitePatterns Serine/Threonine protein kinases active-site signature. 512 524 IPR008271 GO:0004672|GO:0006468
Car12g00472 728 ProSitePatterns Protein kinases ATP-binding region signature. 398 420 IPR017441 GO:0005524
Car12g00472 728 Pfam Protein kinase domain 393 660 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car12g00472 728 ProSiteProfiles Protein kinase domain profile. 392 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00472 - - - cmos:111454075 1422.91
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car05g00176 Car12g00472 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car07g00991 Car-Chr7:5647233 Car12g00472 Car-Chr12:2964459 8.79E-87 dispersed
Car12g00472 Car-Chr12:2964459 Car15g00116 Car-Chr15:666071 3.22E-93 dispersed
Car18g00924 Car-Chr18:9992602 Car12g00472 Car-Chr12:2964459 4.22E-83 dispersed
Car12g00472 Car-Chr12:2964459 Car03g00914 Car-Chr3:7211307 0 wgd
Car12g00472 Car-Chr12:2964459 Car05g00176 Car-Chr5:937808 0 wgd
Car12g00472 Car-Chr12:2964459 Car07g00722 Car-Chr7:3720077 6.69E-164 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g862 . . . . . . . . Cmo05g00222 Cmo12g00445 . . . Car12g00472 . . Cpe07g00450 Bhi04g00293 . . . . . Lcy13g2018 Cla08g01525 . . . . . . Cone4ag1879 Cone7ag1788 Cone17ag1312 . . . . Cme03g01991 . Blo18g00827 . Bda01g01485 Bpe02g01680 . Bma01g00774 . . . . Cma12g00502 Cma05g00216 Car05g00176 . Cpe11g00178 . . . . . . . . . . . . . . . Lsi08g01427 Csa02g02013 Chy03g01496 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001068 3 4 2 2 3 2 4 2 2 2 2 2 4 2 1 4 2 6 4 2 2 2 1 2 1 2 2 2 2 1 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89223 PF00069 Pkinase 1.60E-40 CL0016 Car PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car12g00472 Car_Chr12 FPKM 0.19464 0.448231 0.0 0.240371 0.0 0.0 0.0 0.186797 0.0 0.201759