Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00477 ATGTTCACCTCCTCCCATCCCCTCCCGGATCTCTCCTTGCACATAAGTCCGCCGTCAAATTCCGGCAGCACCGGCAGCGATCTCAGCAATGAAACTGCCGGGTTCTATCTTCCGGCTAAACCCCATATGGGTCTACCTCTTGAGCTTGAAACAAGCTTCAACAATGGCCGCCATTTTAACGACCACCTACCTCAAATCTATGGCCGCCATTTTAAAAGAGCTGCAAAAATGGGTATTAGAGCTCCAAGAATGAGATGGACTACAACGCTTCATGCTCATTTTGTCCACGCCGTTCAGCTGCTTGGCGGCCATGAAAGGGCAACACCAAAATCTGTTTTGGAGCTTATGAATGTGAAGGATCTAACCCTAGCTCATGTAAAGAGCCATTTACAGATGTATAGAACAGTGAAAAGCACAGACAAATCAACTGCCTTGAAGAACCAAAGACAAGAAGTTGATCCAAGTGGTGCTGAGATCTCTAACCCAATGTGGAAAAGCTCTGATCAAATGTGA 513 46.59 MFTSSHPLPDLSLHISPPSNSGSTGSDLSNETAGFYLPAKPHMGLPLELETSFNNGRHFNDHLPQIYGRHFKRAAKMGIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKSTALKNQRQEVDPSGAEISNPMWKSSDQM 170
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3011308 3012209 - Carg25852-RA Car12g00477 158093

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00477 170 MobiDBLite consensus disorder prediction 1 33 - -
Car12g00477 170 Pfam Myb-like DNA-binding domain 83 134 IPR001005 -
Car12g00477 170 MobiDBLite consensus disorder prediction 1 31 - -
Car12g00477 170 MobiDBLite consensus disorder prediction 139 170 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00477 - - - cpep:111799190 330.487
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car05g00175 Car12g00477 CCT
Car09g00164 Car12g00477 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00175 Car-Chr5:930055 Car12g00477 Car-Chr12:3011308 3.46E-60 dispersed
Car09g00164 Car-Chr9:818529 Car12g00477 Car-Chr12:3011308 1.64E-33 dispersed
Car12g00477 Car-Chr12:3011308 Car16g01117 Car-Chr16:9609693 4.97E-36 dispersed
Car12g00474 Car-Chr12:2977185 Car12g00477 Car-Chr12:3011308 1.23E-35 proximal
Car01g01464 Car-Chr1:12517899 Car12g00477 Car-Chr12:3011308 8.67E-11 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g841 . Blo12g00936 . . . . . . Cmo05g00220 Cmo12g00449 . Cma09g00194 . Car12g00477 Sed01g2622 Cpe06g00132 Cpe07g00452 Bhi04g00296 Tan02g1912 Cmetu04g2692 . Hepe10g0690 . Lcy13g2020 Cla08g01528 Cam08g2020 Cec08g1594 Cco08g1731 Clacu08g1709 . Cre08g1490 Cone4ag1544 Cone7ag1407 Cone17ag1309 Cone20ag0163 Lsi04g01607 Csa03g04154 Chy04g00565 Cme03g01993 . Blo18g00828 . Bda01g01484 Bpe02g01679 . Bma01g00775 . . . Cmo09g00190 Cma12g00506 Cma05g00213 Car05g00175 Car09g00164 Cpe11g00176 Cpe02g00150 Bhi09g02029 . . . . Mch11g0241 . Cla05g01991 Cam05g2142 Cec05g2157 Cco05g2205 Clacu05g2133 Cmu05g2006 Cre05g2130 Lsi08g01429 Csa02g02010 Chy03g01499 Cme04g00674
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car14g01696 CST 12 271 G2-like Transcription Factor Family AT3G24120 60.1 1.2e-73 273.9
Car10g01051 . 16 203 G2-like Transcription Factor Family AT3G24120 53.0 9.5e-42 167.9
Car19g00887 . 18 178 G2-like Transcription Factor Family AT3G24120 58.5 8.1e-41 164.9
Car06g01068 CST 12 101 G2-like Transcription Factor Family AT3G24120 87.0 1.1e-40 164.5
Car19g00157 . 4 152 G2-like Transcription Factor Family AT3G24120 52.5 1.1e-37 154.5
Car07g00322 . 31 149 G2-like Transcription Factor Family AT3G24120 68.0 2.4e-37 153.3
Car20g00562 . 92 236 G2-like Transcription Factor Family AT5G44190 66.2 6.8e-47 185.3
Car01g00304 . 189 413 G2-like Transcription Factor Family AT5G16560 50.4 2.3e-43 173.7
Car19g00172 . 150 352 G2-like Transcription Factor Family AT5G16560 52.2 2.6e-42 170.2
Car12g00477 CCT 4 143 G2-like Transcription Factor Family AT5G42630 58.3 8.2e-38 154.5
Car04g02002 . 40 278 G2-like Transcription Factor Family AT1G25550 52.0 6.6e-45 178.3
Car04g02002 . 40 278 G2-like Transcription Factor Family AT3G25790 51.6 1.5e-38 157.1
Car03g00998 . 1 305 G2-like Transcription Factor Family AT5G05090 54.1 3.8e-74 275.4
Car07g01077 . 1 299 G2-like Transcription Factor Family AT5G05090 54.5 1.2e-72 270.4
Car14g00453 . 1 279 G2-like Transcription Factor Family AT5G05090 58.2 1.1e-70 263.8
Car06g00019 . 1 286 G2-like Transcription Factor Family AT5G05090 52.3 2.4e-68 256.1
Car14g01696 CST 12 315 G2-like Transcription Factor Family AT4G13640 57.3 2.4e-61 233.0
Car14g01696 CST 12 271 G2-like Transcription Factor Family AT3G24120 60.1 1.2e-73 273.9
Car10g01051 . 16 203 G2-like Transcription Factor Family AT3G24120 53.0 9.5e-42 167.9
Car19g00887 . 18 178 G2-like Transcription Factor Family AT3G24120 58.5 8.1e-41 164.9
Car06g01068 CST 12 101 G2-like Transcription Factor Family AT3G24120 87.0 1.1e-40 164.5
Car19g00157 . 4 152 G2-like Transcription Factor Family AT3G24120 52.5 1.1e-37 154.5
Car07g00322 . 31 149 G2-like Transcription Factor Family AT3G24120 68.0 2.4e-37 153.3
Car06g01472 . 47 278 G2-like Transcription Factor Family AT1G69580 50.4 2.7e-40 163.3
Car19g00887 . 1 387 G2-like Transcription Factor Family AT1G79430 51.7 3.0e-82 302.8
Car10g01051 . 1 352 G2-like Transcription Factor Family AT1G79430 54.6 2.1e-80 296.6
Car02g00488 . 1 209 G2-like Transcription Factor Family AT1G79430 63.0 1.5e-54 210.7
Car07g00323 . 66 274 G2-like Transcription Factor Family AT2G01060 66.7 8.6e-54 207.6
Car07g01077 . 1 299 G2-like Transcription Factor Family AT3G10760 62.5 2.4e-89 326.2
Car03g00998 . 1 305 G2-like Transcription Factor Family AT3G10760 60.1 1.7e-87 320.1
Car06g00019 . 1 286 G2-like Transcription Factor Family AT3G10760 58.1 3.9e-84 308.9
Car14g00453 . 1 279 G2-like Transcription Factor Family AT3G10760 58.6 7.6e-80 294.7
Car07g01077 . 1 204 G2-like Transcription Factor Family AT2G40970 62.0 6.5e-60 228.0
Car14g00453 . 1 195 G2-like Transcription Factor Family AT2G40970 59.9 4.2e-59 225.3
Car03g00998 . 1 204 G2-like Transcription Factor Family AT2G40970 59.0 5.5e-59 224.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012530 0 1 0 0 0 1 3 1 1 1 1 1 2 1 1 1 1 0 2 1 1 1 1 1 1 1 1 2 1 0 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4411 PF00249 Myb_DNA-binding 4.60E-06 CL0123 Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car12g00477 Car_Chr12 FPKM 20.868231 23.087555 17.092634 17.045408 17.530815 17.023726 17.567474 31.569775 31.661785 31.278852