Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00477 ATGTTCACCTCCTCCCATCCCCTCCCGGATCTCTCCTTGCACATAAGTCCGCCGTCAAATTCCGGCAGCACCGGCAGCGATCTCAGCAATGAAACTGCCGGGTTCTATCTTCCGGCTAAACCCCATATGGGTCTACCTCTTGAGCTTGAAACAAGCTTCAACAATGGCCGCCATTTTAACGACCACCTACCTCAAATCTATGGCCGCCATTTTAAAAGAGCTGCAAAAATGGGTATTAGAGCTCCAAGAATGAGATGGACTACAACGCTTCATGCTCATTTTGTCCACGCCGTTCAGCTGCTTGGCGGCCATGAAAGGGCAACACCAAAATCTGTTTTGGAGCTTATGAATGTGAAGGATCTAACCCTAGCTCATGTAAAGAGCCATTTACAGATGTATAGAACAGTGAAAAGCACAGACAAATCAACTGCCTTGAAGAACCAAAGACAAGAAGTTGATCCAAGTGGTGCTGAGATCTCTAACCCAATGTGGAAAAGCTCTGATCAAATGTGA 513 46.59 MFTSSHPLPDLSLHISPPSNSGSTGSDLSNETAGFYLPAKPHMGLPLELETSFNNGRHFNDHLPQIYGRHFKRAAKMGIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKSTALKNQRQEVDPSGAEISNPMWKSSDQM 170
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3011308 3012209 - Carg25852-RA Car12g00477 158093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00477 170 MobiDBLite consensus disorder prediction 1 33 - -
Car12g00477 170 Pfam Myb-like DNA-binding domain 83 134 IPR001005 -
Car12g00477 170 MobiDBLite consensus disorder prediction 1 31 - -
Car12g00477 170 MobiDBLite consensus disorder prediction 139 170 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car05g00175 Car12g00477 CCT
Car09g00164 Car12g00477 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00175 Car-Chr5:930055 Car12g00477 Car-Chr12:3011308 3.46E-60 dispersed
Car09g00164 Car-Chr9:818529 Car12g00477 Car-Chr12:3011308 1.64E-33 dispersed
Car12g00477 Car-Chr12:3011308 Car16g01117 Car-Chr16:9609693 4.97E-36 dispersed
Car12g00474 Car-Chr12:2977185 Car12g00477 Car-Chr12:3011308 1.23E-35 proximal
Car01g01464 Car-Chr1:12517899 Car12g00477 Car-Chr12:3011308 8.67E-11 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4411 PF00249 Myb_DNA-binding 4.60E-06 CL0123 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00477 - - cpep:111799190 330.487