Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00479 ATGGATAAAGTAAGCGATAGCTCCAACAAATGGGCAGAAGATATCTATTGGAGCCATTTTCAGTTCACCCACTTCTATCAAATTCTTGCCGGTGGTAGTGAACAGAAACTTGTACTTCCAAACAAATTTGCAAACAATTTGAAAAAGAAACTTCCATCAACTGTGACTCTTAAAGGTCCTAGTGGTGCCACATGGGATGTGGGATTGTCTGCCAATGATGATAAATTGTATTTCAAACACGGCTGGCAAGAGTTTGTGAAGGCTCATTCTCTGGAGCAGAATGATCTTTTAGTTTTTAGGTACAATGGAGCGTCGCAGTTTGACGTTTTAGTATTTGATTGGAAGAGCTTTTGTGAGAAGGAAGCCTCATATTTCGTAAAAATCTGTGAGCATAAAAATAGCGACACTGGACACAAGGCTAAGAGGAAGTTTGGCGAACCCACTTTAGATAGTTTTGATGTTGATGCTAACAATGGTGCTGAATGCGCTTCGTCTGAAAATAATATGCACGATGACAGTATGGAACGTATGATACAGGACGTCGTGTCCAAAGCTACAAATTTGAATGGTCAACCTGAGGTTTTTTCAGCTCAGCCTATACGAACAATACGTACTAGAAGAAGGAAAGAAACTCCAAAAAGTGCAGCAGTTATGACACCCACCCCTGCTCCGGTTCAGTTATCAGATTCCGACGAGGAAGCTACTCCTGTTAAGAAAACCGGGTCATATGCCGAGCAATACCTATCCAATCGTAGGGCTATTACGGAAGAGGACAAGAACAATGCCCTGAAGTTGGCAGAAGCAGCATCAAGCAATGCTGGTTTCAAAGTTATCATGCGACCTTCACATGTATACAGGAGATTCTACCTGTTTATCCCCACTCAATGGGTTACGAAAAATCTCTCCCTTTGCAACCAAGACGTAATACTGCGTCTCGGAAACGACGAATGGCCAGCCAAATTCAACTTTACCGCAAGTCGTCAATGCGGTGGCCTTACAAGTGGATGGAAACATTTCGCTATAGATAACAATTTAGAAGAATTCGACGTCTGCCTCTTTGAGCCTGTCCCTATAACAAGTGGTCCTGTGGTCCTGGAGGTCAAAATCTTCCGTGTTGTCGAAGATGTTATCCCTCTTACTCGTGTGTCGGCTAAGAGCAACAGGAAGCTAATCAAAGCCAACTAA 1185 42.87 MDKVSDSSNKWAEDIYWSHFQFTHFYQILAGGSEQKLVLPNKFANNLKKKLPSTVTLKGPSGATWDVGLSANDDKLYFKHGWQEFVKAHSLEQNDLLVFRYNGASQFDVLVFDWKSFCEKEASYFVKICEHKNSDTGHKAKRKFGEPTLDSFDVDANNGAECASSENNMHDDSMERMIQDVVSKATNLNGQPEVFSAQPIRTIRTRRRKETPKSAAVMTPTPAPVQLSDSDEEATPVKKTGSYAEQYLSNRRAITEEDKNNALKLAEAASSNAGFKVIMRPSHVYRRFYLFIPTQWVTKNLSLCNQDVILRLGNDEWPAKFNFTASRQCGGLTSGWKHFAIDNNLEEFDVCLFEPVPITSGPVVLEVKIFRVVEDVIPLTRVSAKSNRKLIKAN 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3018448 3022253 - Carg25850-RA Car12g00479 158095

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00479 394 MobiDBLite consensus disorder prediction 206 238 - -
Car12g00479 394 Pfam B3 DNA binding domain 275 371 IPR003340 GO:0003677
Car12g00479 394 Pfam B3 DNA binding domain 32 110 IPR003340 GO:0003677
Car12g00479 394 ProSiteProfiles B3 DNA-binding domain profile. 22 115 IPR003340 GO:0003677
Car12g00479 394 ProSiteProfiles B3 DNA-binding domain profile. 275 373 IPR003340 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00479 - - - csv:101222600 660.603
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car09g00166 Car12g00479 CCT
Car01g01462 Car12g00479 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00479 Car-Chr12:3018448 Car20g00761 Car-Chr20:4484941 1.30E-27 dispersed
Car18g00205 Car-Chr18:1172510 Car12g00479 Car-Chr12:3018448 1.89E-09 dispersed
Car01g01462 Car-Chr1:12504046 Car12g00479 Car-Chr12:3018448 3.74E-19 wgd
Car12g00479 Car-Chr12:3018448 Car02g00285 Car-Chr2:1925584 7.62E-09 wgd
Car12g00479 Car-Chr12:3018448 Car20g00760 Car-Chr20:4479909 2.58E-12 wgd
Car12g00479 Car-Chr12:3018448 Car03g00906 Car-Chr3:7156671 1.73E-11 wgd
Car12g00479 Car-Chr12:3018448 Car05g00174 Car-Chr5:923616 1.01E-167 wgd
Car12g00479 Car-Chr12:3018448 Car07g00717 Car-Chr7:3698910 3.57E-09 wgd
Car12g00479 Car-Chr12:3018448 Car09g00166 Car-Chr9:827345 3.59E-25 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g838 . Blo12g00937 . Bda03g00232 . Bpe04g00197 Bma04g00184 . . . Cma01g01876 Cma09g00197 Car01g01462 Car12g00479 . Cpe06g00134 Cpe07g00453 . . . . . . . . . . . . . . Cone4ag1546 Cone7ag1405 . . Lsi04g01605 Csa03g04152 Chy04g00568 . . . . . . . . . . Cmo01g01934 Cmo09g00192 Cma12g00508 . . Car09g00166 . Cpe02g00152 Bhi09g02026 . . . . . . Cla05g01994 Cam05g2144 Cec05g2160 Cco05g2207 Clacu05g2135 Cmu05g2008 Cre05g2133 . Csa02g02009 . Cme04g00679
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006724 0 1 0 3 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 5 2 0 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4412 PF02362 B3 5.10E-11 CL0405 Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car12g00479 Car_Chr12 FPKM 1.517434 2.290184 2.449144 2.147687 1.564266 0.942999 2.623592 1.440625 3.026707 3.698644