Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00481 ATGGCTATTCGAGTTACCCTCTCCTACTCCGGCTATGTTGCCCAAAACCTAGCTTCCTCCACCGGCCTTCGGGCCGGTAACTGCCGCGTTTTTCAGGAGTGTTGGGTCCGATCTTGTATTTTCGGCTCAAGCCATAATCCGGACCTCAAATCTGCTGGAAGCGCGCGCAATTATCGGTCTGATAGCCGGCGGTTTAAGCCGAGTTGTTCTTCTATGTACAGCGCTCTCCCGGGAGAAATGGTTGGGGAAAACCCTAAGAGTCCAATGATTTTGGGTTTGATTTCGATGCTGAAATCGATGGCGTCTGCTTCTGAATCTTCCCCGATCCCCACGGGGATTTTGGGGGTTTCTTCATTTAAAGCCACTTCGATTATACCCTTTCTACGAGGCTCGAATTGGCTTCCGGGTTACGATATACGATCTCATGTAAGCGATGATGTGGATAAAGGCGGAACAGTTTGTTGTGATTATGATGAAAGTGGGAGTGATGAGTTTTATGAGAGTGATTTTGAGAAGAGCAGCTGGGTTTCGCGCTTGTTGAATACCTATGCCGATGATGCAAAGGCTCTGTTTACGGCTTTGACTGTTAGTGTGCTCTTTAAATCGTTCTTGGCGGAGCCGAAATCGATTCCTTCTTCTTCCATGTATCCTACTCTGGAAGCAGGGGATCGTGTTTTAGCTGAAAAGGTTTCATACTTTTTCAGGAAACCTGAAGTTTCTGATATAGTGATCTTCAAACCTCCTAAGATCTTGCAGGAATTTGGAGTTAGTTCGAGTGAGGTGTTTATTAAGAGAGTTGTGGCTACGTCTGGGGACGTGGTGGAAGTTCGGAACGGGAAATTGGTGGTAAACGGTGTTGTTGAAGATGAGGACTTCATCTTAGAGCCAATTGCTTATGAGATGGATCCAATGCTTGTGCCTGAAGGTTATGTGTATGTAATGGGAGACAACCGTAACAATAGTTGTGATTCTCACAACTGGGGTCCGCTCCCGGTTGAAAATATCGTAGGAAGATCATTATTCAAGTACTGGCCTCCCCCCAAAGGATCCAGTATGGTAGATGAACCACATGCAAAGAACATTAATCTGGGGATGTCCTGA 1101 46.32 MAIRVTLSYSGYVAQNLASSTGLRAGNCRVFQECWVRSCIFGSSHNPDLKSAGSARNYRSDSRRFKPSCSSMYSALPGEMVGENPKSPMILGLISMLKSMASASESSPIPTGILGVSSFKATSIIPFLRGSNWLPGYDIRSHVSDDVDKGGTVCCDYDESGSDEFYESDFEKSSWVSRLLNTYADDAKALFTALTVSVLFKSFLAEPKSIPSSSMYPTLEAGDRVLAEKVSYFFRKPEVSDIVIFKPPKILQEFGVSSSEVFIKRVVATSGDVVEVRNGKLVVNGVVEDEDFILEPIAYEMDPMLVPEGYVYVMGDNRNNSCDSHNWGPLPVENIVGRSLFKYWPPPKGSSMVDEPHAKNINLGMS 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3029836 3033649 + Carg25847-RA Car12g00481 158097

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00481 366 ProSitePatterns Signal peptidases I signature 3. 311 324 IPR019758 GO:0004252|GO:0016021
Car12g00481 366 Pfam Signal peptidase, peptidase S26 187 344 IPR019533 GO:0004252|GO:0006465
Car12g00481 366 ProSitePatterns Signal peptidases I serine active site. 212 219 IPR019756 GO:0004252|GO:0016021
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00481 K03100 lepB; signal peptidase I [EC:3.4.21.89] - csv:101222362 594.734
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car09g00171 Car12g00481 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00575 Car-Chr10:2907377 Car12g00481 Car-Chr12:3029836 1.76E-77 dispersed
Car11g00494 Car-Chr11:2679113 Car12g00481 Car-Chr12:3029836 5.99E-78 dispersed
Car12g00481 Car-Chr12:3029836 Car15g00606 Car-Chr15:3359784 2.08E-24 dispersed
Car12g00481 Car-Chr12:3029836 Car09g00171 Car-Chr9:849846 8.11E-156 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g833 . . . . . . . . . Cmo12g00452 . Cma09g00203 . Car12g00481 Sed11g0987 Cpe06g00138 Cpe07g00455 Bhi04g00299 Tan02g1908 Cmetu03g1436 . Hepe10g0694 . Lcy13g2022 Cla08g01531 Cam08g2024 Cec08g1598 Cco08g1734 Clacu08g1712 . Cre08g1493 Cone4ag1550 Cone7ag1402 . . Lsi04g01599 Csa04g02369 . Cme03g01996 . . . Bda01g01456 . . . . Sed01g2628 . Cmo09g00197 Cma12g00511 . . Car09g00171 . . Bhi09g03385 Tan01g4845 Cmetu07g1797 . Hepe01g1727 . . Cla05g01999 Cam05g2150 Cec05g2167 Cco05g2215 Clacu05g2142 Cmu05g2012 Cre05g2138 Lsi08g01433 Csa02g02007 Chy07g00098 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003030 2 2 1 1 1 1 2 2 1 2 1 1 2 2 2 2 1 2 2 1 2 2 2 2 3 2 1 3 4 1 53
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car12g00481 Car_Chr12 FPKM 2.210978 2.6735 1.577015 1.636994 8.200881 7.694017 7.705238 0.61242 0.482799 0.674493