Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00483 ATGTGTGGATTAGGTGCTAAAAATGGGGACAAAAAGGGACCCAAACGAGGGGGAAACAGAGCTGCTGTGACTGAAGGACTGGAAAATATGGCGTTTGTGGCGTTGGCCTTGAGCTTGATGACATATTTCAATGGGTATATGAACTTCAGCTTGACAAAATCGGCTACCACTTTGACCAACTTCATGGGAACTACGTTCCTTCTCACGCTCGTCGGCGGCTTTGTCTCCGACACTGAGTGCAAGGCGGCGAACGGCGGGCAGGAGGCGATTCTGTACGTGGGAATTTACCTGATAGCGCTGGGAGCGAGTGGGGTAAAAGTGGCGCTGCCGGCGTTGGGAGCGGATCAGTTCGAGGAGGGAGATCCGGCGGAGGCGGGGAAACTGTCGAGCTTTTTCAACTGGTTCTTGTTCAGCCTGACCACAGGGTCGACCGTGGGGTTGACATTGATAGTGTGGATAAACACGGAGGTGGGCTGGGACTGGGCGTTTGTGGTGTGCACCACCGCCGTTCTCGCCGCCATTCTTGTTGTGTGCGCCGGCAAGTCCTTCTTTCGCAATAATGTGCCTAAAGGAAGCCCCATTCTTAGAATTCTACAGGTCATTGTAGCTTCAATCCGTAACAGGAAACTTCCACTTCCAAATAATGCTGATGAACTACATGAGATTCGTGGCAAAGAAGCAGATATCCCAATTGAAATCCTTGAGAAAACCGATCAATTCAGCTTAACTATGGACTGCAATTTCATAGGATTCAAAATTCCCGGCCCCTCCATCCCTGTTATCCCCTTGCTCTTCATGTTCTTCTTCATCCCATTTTACGAGCGCGTTTTTGTTCCTCTGGCCCGTAAAATCACTGGAATTCCCACGGGAATTCGCCACCTCCAAAGGATTGGTTTCGGACTGATACTCACTGCAGCATCCATGGCCATTGCTGGGTTCGTGGAGACCGACGCAAGAACGTCGCGATTCAACACAACATGGTGGATATTCTGTGTATTTGGAATGGCTGATATATTCACTATGGTAGGTCTGCTGGAATTCTTTTACGCCGAGAGCTCGGCAGAGATGAAATCGTTGAGCACAGCCATCGCTTGGTGCTCAATCGCTTTCGGTTACTTCACGAGTACGGTGGTGGTGGAGGTGGTGAACAAGGCGAGCGGAGGGTGGTTGGCGAGCAACAACCTCAACAGGGACAATTTGAACTACTTCTACTGGTTACTGTCAGTGTTGAGTGTGGTGAATTTTGGGTTTTATTTGGTTTGTGCTTCTTGGTATAGGTATAAGAATGTGGAGGTCCTACAGAAACAAGGTGAAGAAGGGTTTGACATAGTGCAGGGGCCCTAA 1344 49.7 MCGLGAKNGDKKGPKRGGNRAAVTEGLENMAFVALALSLMTYFNGYMNFSLTKSATTLTNFMGTTFLLTLVGGFVSDTECKAANGGQEAILYVGIYLIALGASGVKVALPALGADQFEEGDPAEAGKLSSFFNWFLFSLTTGSTVGLTLIVWINTEVGWDWAFVVCTTAVLAAILVVCAGKSFFRNNVPKGSPILRILQVIVASIRNRKLPLPNNADELHEIRGKEADIPIEILEKTDQFSLTMDCNFIGFKIPGPSIPVIPLLFMFFFIPFYERVFVPLARKITGIPTGIRHLQRIGFGLILTAASMAIAGFVETDARTSRFNTTWWIFCVFGMADIFTMVGLLEFFYAESSAEMKSLSTAIAWCSIAFGYFTSTVVVEVVNKASGGWLASNNLNRDNLNYFYWLLSVLSVVNFGFYLVCASWYRYKNVEVLQKQGEEGFDIVQGP 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3033492 3036744 - Carg25846-RA Car12g00483 158099

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00483 447 MobiDBLite consensus disorder prediction 1 20 - -
Car12g00483 447 Pfam POT family 240 386 IPR000109 GO:0016020|GO:0022857|GO:0055085
Car12g00483 447 Pfam POT family 77 209 IPR000109 GO:0016020|GO:0022857|GO:0055085
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00483 K14638 SLC15A3_4, PHT; solute carrier family 15 (peptide/histidine transporter), member 3/4 - tcc:18591275 479.559
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00483 Car-Chr12:3033492 Car12g00773 Car-Chr12:7445449 2.43E-103 dispersed
Car12g00483 Car-Chr12:3033492 Car07g00133 Car-Chr7:816197 2.52E-109 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g832 . . . . . . . . . Cmo12g00454 . . . Car12g00483 . . Cpe07g00456 Bhi04g00300 . . . . . Lcy13g2023 Cla08g01532 Cam08g2025 Cec08g1599 Cco08g1735 Clacu08g1713 . Cre08g1494 . . . Cone20ag0168 . . . Cme03g01997 . . . . . . . . . . . Cma12g00513 . . . . . . . . . . . . . . . . . . . Lsi08g01434 Csa02g02006 Chy03g01503 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007975 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 11 1 1 1 1 1 1 0 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car12g00483 Car_Chr12 FPKM 3.382609 3.880768 24.737226 27.039291 9.596889 9.922906 8.748389 12.413857 13.755413 11.792829