Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00485 ATGCCTTTCTTTCACAAAAGCGCTTCGAATTCTCGGCTTCAACAGAAAGCACCAGATTCTGTTTTCTCCGTTGGTCCACCGGAGCCGCTCGCTCAGCGTCGGCTTACCAGGCAGAGGAAGCTCCGGCATCTTACGGATCGAGATATTCGCTTTGAACAACCTCGATCGTTTCCTGATTCTCCCGATTTATTGTCAAAATCTAAAACAGGTCTTGGAGGTTCCGAACGTTGGTCCTCCATTGCTTTGCCGCAGCCTTTACCTCTGCCAGAGTTCTTTCCGATTCGAAATCCAGAGTCAGGTTCTTGGAGTTCTGGACAAGGTCGCGGTGGATCGCCTTTTGAAACTCCGGTCGGGAAGAGCGCCGATCACGCAACAACGAAGAGTAGAAGTTCCGGTAACAATCAAAGGCGAATCGCTACAGATTTAGCCTTGGAAGTTGCTAACGGACATACAGGAGGAACTCAACCTGTAAATTTAGGGAAATCGAATTTGATTAAGGATTTTGTTTTTAGTTGTTTGGATCAACATCCAAACAACAAAGCCAGGGGTTCCCCAACTCATCCGAGTGTTGAAAAGGGTAACCACAAAGTGAAACAGAAGATTTCGACGTCGAAGAGTGCACCGACGAGCATCTTTCCGAGTCCTGCCGTTAGCCCGCGAAGATCATGTACAGGAGATCCTTTTGTTTCTGGTTTGACTCGCCATGAACATCAGGAATCTCCTTCCAATAATTCTCCCAAAGTACCATCCCTTAAAACTCCAAATAGTTCTCAACCTTCTCCTCTGCAAAGCCCGGCAGCTCGAAGTTCCGTAAGCAATCCCAGATCTTCTAATGATACGCCATTTCCTCTGCATCATAAGTTACAAAAGAATCATAGTATAGGTCATGTCAATGCCCATCCATTGCCTCTTCCTCCTCCATTAGTAGCCTCGTCACAATCGTCTCCCCAATCTCTTCCGTCGAAAGATAAACCATACATTTCATCTGTGAAAGGTCAATGGCAAAAGGGAAAGCTTATTGGACGTGGTACGTTTGGAAGCGTTTATCTCGCAACGAACAGCGAGACTGGAGCTTTATGTGCAATGAAAGAAGTTGACCTCATTCCTGATGATCCTAAATGTGCTGAAAGTATAAAGCAACTAGAGCAGGAAATTAAAGTTCTTAGTCAACTTAAACATCCAAATATTGTACAGTATTATGGAAGTGAAATAATTGGGGATCATTTCTACATATATTTGGAGTATGTTTTTCCTGGGTCGATAAATAAATTTGTCCGCGAACGTTGTGGAACCATTACAGAATCTATCGTTCGCAACTTCACCCGACATATTCTCTCTGGACTCGCTTACTTGCATAGCACAAAAACGATCCACAGGGATATCAAAGGTGCAAACTTGCTAGTTGATTCATCAGGCGTCGTCAAACTTGCAGATTTCGGGATGGCGAAACATCTGACAGGGCAGTACGATCTTTCGTTGAAGGGTAGTCCGTATTGGATGGCTCCGGAGGTCATAAAGGCTGTTATGTTGAAAGATGCCAACCCTGATCATGCTTTGGCAGTTGACATTTGGAGTCTGGGTTGCACCATAATTGAAATGCTGAATGGAAAACCTCCATGGAGTGAGTTTGAAGGGCATCAAGTTATGTTCAAGGTGTTGAATAAAGCCCCTCCTATTCCAGAAAAGCTATCTCCAGAAGGGAAAGATTTCCTCCAGTGTTGCTTCCAAAGGAATCCAGCTGACAGATCAACAGCAACCATGCTCCTTGACCATCCTTTCGTAAGATCCTCAATCGACTCAACCGTTTCAGTCCCGAGATCAGCATTTTCGACGATGAACCTCGTGGCATCTTTTTCGCCATTGGAGACTGACTCTCTTTTCTTCACCTCTCTAATGTCACTCCCAATTGACCAACAATCTCCGCCGGCGCCCGGAATGCAGCAACCTTACGGCGGCTCTGTTGGTCCTGTCATTGGAGTGCTCGTCGTCATCATTGTGTTCGCGGTGGTCGCCGTCGTTGTGGGGCGGCTGTGCTCGGGGAGGAGTATAATGGGTTACGGCCATTTTGACTTGGAGAGATGGGCGGAGGTCAAATGCTCGTCTTGTATTGATGGAAGGATTAGGCCGCCGCCGTCGCCGTCGCCGAGGGTTAATAATGTCTCCACCGCCGCTGGTTCTCTTCCGACGGCGACAATGTCGGTCCAAACCCAGCAAGATGAACCAGCTTCTCAAAATCCACCTCCCAACGCTTGA 2253 46.83 MPFFHKSASNSRLQQKAPDSVFSVGPPEPLAQRRLTRQRKLRHLTDRDIRFEQPRSFPDSPDLLSKSKTGLGGSERWSSIALPQPLPLPEFFPIRNPESGSWSSGQGRGGSPFETPVGKSADHATTKSRSSGNNQRRIATDLALEVANGHTGGTQPVNLGKSNLIKDFVFSCLDQHPNNKARGSPTHPSVEKGNHKVKQKISTSKSAPTSIFPSPAVSPRRSCTGDPFVSGLTRHEHQESPSNNSPKVPSLKTPNSSQPSPLQSPAARSSVSNPRSSNDTPFPLHHKLQKNHSIGHVNAHPLPLPPPLVASSQSSPQSLPSKDKPYISSVKGQWQKGKLIGRGTFGSVYLATNSETGALCAMKEVDLIPDDPKCAESIKQLEQEIKVLSQLKHPNIVQYYGSEIIGDHFYIYLEYVFPGSINKFVRERCGTITESIVRNFTRHILSGLAYLHSTKTIHRDIKGANLLVDSSGVVKLADFGMAKHLTGQYDLSLKGSPYWMAPEVIKAVMLKDANPDHALAVDIWSLGCTIIEMLNGKPPWSEFEGHQVMFKVLNKAPPIPEKLSPEGKDFLQCCFQRNPADRSTATMLLDHPFVRSSIDSTVSVPRSAFSTMNLVASFSPLETDSLFFTSLMSLPIDQQSPPAPGMQQPYGGSVGPVIGVLVVIIVFAVVAVVVGRLCSGRSIMGYGHFDLERWAEVKCSSCIDGRIRPPPSPSPRVNNVSTAAGSLPTATMSVQTQQDEPASQNPPPNA 750
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3045166 3051469 + Carg25844-RA Car12g00485 158101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00485 750 MobiDBLite consensus disorder prediction 717 744 - -
Car12g00485 750 MobiDBLite consensus disorder prediction 176 326 - -
Car12g00485 750 Pfam Protein kinase domain 335 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car12g00485 750 ProSiteProfiles Protein kinase domain profile. 334 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car12g00485 750 MobiDBLite consensus disorder prediction 235 284 - -
Car12g00485 750 MobiDBLite consensus disorder prediction 121 136 - -
Car12g00485 750 ProSitePatterns Protein kinases ATP-binding region signature. 340 363 IPR017441 GO:0005524
Car12g00485 750 MobiDBLite consensus disorder prediction 1 136 - -
Car12g00485 750 MobiDBLite consensus disorder prediction 200 217 - -
Car12g00485 750 MobiDBLite consensus disorder prediction 41 55 - -
Car12g00485 750 MobiDBLite consensus disorder prediction 706 750 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car05g00172 Car12g00485 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00485 Car-Chr12:3045166 Car16g00103 Car-Chr16:632279 8.14E-107 dispersed
Car11g01082 Car-Chr11:8451640 Car12g00485 Car-Chr12:3045166 9.61E-08 wgd
Car12g00485 Car-Chr12:3045166 Car19g00474 Car-Chr19:6393965 1.13E-12 wgd
Car12g00485 Car-Chr12:3045166 Car02g00298 Car-Chr2:2001389 1.72E-07 wgd
Car12g00485 Car-Chr12:3045166 Car03g00893 Car-Chr3:7090550 5.16E-155 wgd
Car12g00485 Car-Chr12:3045166 Car05g00172 Car-Chr5:890545 0 wgd
Car12g00485 Car-Chr12:3045166 Car07g00707 Car-Chr7:3640237 4.55E-162 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89224 PF00069 Pkinase 3.50E-68 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00485 - - cmo:103487921 942.184