Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00498 ATGGGAGTCGCTAATCTCTCATACGAGGAATGTCGTCGCAAGAGAGTCGAAGAAAACAAGAAGAGAATGGATGCTCTAAATTTGCCCTTGCTTTCTCAAGCTCTCCTCGATTCTTCTCCTTCCAAATCCAAATCCAAATCCTCCCCTGCCAAGCATCGTGAGATGAAGAAACAACTGGTGGTAGTGAGGAGATCCAGTCGTGTAGCAAAACAACCAGGGCCTGTTTACGCTGAAGTTCTTGTCAATCGCGTGGCGATTCCTAAAAGATTCTCCAGCGCAAGAGATTATCCAGACCATTTTTTTGCTTCGGATGAAGCAAGAAAAAATGCGTTTGAAAGAGCCGAGCAATTACAATCTGTATTGGAGCCAAATTATCCCAACTTTATAAAGTCAATGGTTCGGTCTCATGTAAGCGGTTGTTTCTGGCTGGGCCTTCCTTCTCATTTCTGCAAGGAGCACCTACCAACCAATGATGGAGTAATGACTTTAATAGATGAAGGTGGCGATGAGTATCCAATAATATATTTGGCGCGAAAGACAGGGTTTAGTGGAGGATGGAAGGGTTTTTCAGTTGCTCATAAATTGGCAGATGGGGATGCTGTGATTTTTCAACTCATTAAACCTACAACCTGCAAGGTATACATCTTTCGAGTTGGTGACTCAAAAGAAGATAGCGATTCTGACAGTAGCTAA 693 43.29 MGVANLSYEECRRKRVEENKKRMDALNLPLLSQALLDSSPSKSKSKSSPAKHREMKKQLVVVRRSSRVAKQPGPVYAEVLVNRVAIPKRFSSARDYPDHFFASDEARKNAFERAEQLQSVLEPNYPNFIKSMVRSHVSGCFWLGLPSHFCKEHLPTNDGVMTLIDEGGDEYPIIYLARKTGFSGGWKGFSVAHKLADGDAVIFQLIKPTTCKVYIFRVGDSKEDSDSDSS 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3133682 3136394 + Carg25830-RA Car12g00498 158114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00498 230 ProSiteProfiles B3 DNA-binding domain profile. 128 219 IPR003340 GO:0003677
Car12g00498 230 Pfam B3 DNA binding domain 128 217 IPR003340 GO:0003677
Car12g00498 230 MobiDBLite consensus disorder prediction 34 59 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00498 Car-Chr12:3133682 Car18g01201 Car-Chr18:11602215 1.82E-65 dispersed
Car11g00378 Car-Chr11:2074794 Car12g00498 Car-Chr12:3133682 3.13E-116 transposed
Car12g00498 Car-Chr12:3133682 Car19g00463 Car-Chr19:6314735 9.18E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4415 PF02362 B3 2.20E-13 CL0405 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00498 - - csv:101205473 323.939