Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00510 ATGAATTTCAAGGATTTTGGGAGTGACCCATCTGCCGGAAACGGCGGAGGAGGTGGGCGGCCTTCTGCTAACCATCCATTAGCGCGGCAATCATCTATCTACTCGCTCACATTCGATGAGTTTCAGAGTATGGGGAGTATAGGGAAGGATTTTGGGTCAATGAACATGGATGAGCTGTTGAAGAACATTTGGAGCGCTGAAGAAATGCAAACGATGGCATCTTCTGCTGCTGTTGTTGCTGTTGCTGCTGCTGCTGCTAAAGAAGGGGCTGGTGGTGTTAATGGTAGTGGTGGGTATTTGCAGAGACAAGGCTCTTTGACACTGCCACGGACACTCAGCCAGAAGAAGGTGGATGAGGTATGGAAGGACATAATGGATGAACATGGTGGTTCTAAAGATGGGAGTATTGTTGCTTCTGGTTTGCAACAGAGGCAGCAAACTCTTGGGGAGATGACACTTGAGGAATTTTTGTTGAGAGCTGGAGTTGTGAGAGAGGATACTCAATTGAATGGAAACCCCAACAATGGAGGATTCTTTGGCAATAACAATCATATTCCAATTCAATCTTCGAACTTATTGTTGAATGTTAATGGAGTTAGAGCACATCAGCCACAACCAATATTTCCAAAGCAGCCTACTGAGACCACATATGGGTCTCAGCTGCCTTTGTCTAGTGATGGGATTATGGGGCTTGCGGATCAAAGGTTGAGCTCAAATTTGATGCAAGGCTCTGCACTGCAGGGTGGAAGGATGGGAGTGGTTAGCTTAGCAGCTGGGGCCATGCCTGTTGCAACAGGATCTCCAGCAAACCAGCTATCATCTGATGGGATTGGAAAGAGCAATGGTGATACCTCGTCCTTGTCTCCGGTGCCTTATGCGCTTAATGGAGTGCGGGGGAGGAGATGTAATGGGACTCTGGACAGGGTTGTCGAGAGGAGGCAGCGCAGAATGATAAAGAACAGGGAGTCGGCTGCTCGATCGCGGGCTCGAAAGCAGGCAGAAATCATGGAAATGCACAAGAACCGGGCATTGAAAGTAATGGATACACAACAAGGAACAAAGAAACGATGCTTAAGACGAACGCAGACTGGTGTTGGATTTGGTTCTAAGTGGATCGATCATAAGGACTTCGATCGATCGCTTTCGAACGAACGCAAAGCATGCGTTGTTCGATTCATACAGCTCCTCCACCCTCCTATGGCGCTGCTGCTGCTGCGACGACGGTCGAGTAAATGGCAATCCCGAAAGCAGGATTGA 1257 48.45 MNFKDFGSDPSAGNGGGGGRPSANHPLARQSSIYSLTFDEFQSMGSIGKDFGSMNMDELLKNIWSAEEMQTMASSAAVVAVAAAAAKEGAGGVNGSGGYLQRQGSLTLPRTLSQKKVDEVWKDIMDEHGGSKDGSIVASGLQQRQQTLGEMTLEEFLLRAGVVREDTQLNGNPNNGGFFGNNNHIPIQSSNLLLNVNGVRAHQPQPIFPKQPTETTYGSQLPLSSDGIMGLADQRLSSNLMQGSALQGGRMGVVSLAAGAMPVATGSPANQLSSDGIGKSNGDTSSLSPVPYALNGVRGRRCNGTLDRVVERRQRRMIKNRESAARSRARKQAEIMEMHKNRALKVMDTQQGTKKRCLRRTQTGVGFGSKWIDHKDFDRSLSNERKACVVRFIQLLHPPMALLLLRRRSSKWQSRKQD 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3385224 3387375 + Carg26155-RA Car12g00510 158126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00510 418 Pfam bZIP transcription factor 312 338 IPR004827 GO:0003700|GO:0006355
Car12g00510 418 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 315 330 IPR004827 GO:0003700|GO:0006355
Car12g00510 418 MobiDBLite consensus disorder prediction 1 26 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car05g00153 Car12g00510 CCT
Car05g00153 Car12g00510 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00510 Car-Chr12:3385224 Car15g00504 Car-Chr15:2749471 9.34E-32 dispersed
Car11g01097 Car-Chr11:8627343 Car12g00510 Car-Chr12:3385224 1.54E-79 wgd
Car12g00510 Car-Chr12:3385224 Car19g00453 Car-Chr19:6249930 8.02E-81 wgd
Car12g00510 Car-Chr12:3385224 Car05g00153 Car-Chr5:769103 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4416 PF00170 bZIP_1 1.40E-06 CL0018 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00510 K14432 - csv:101223043 514.227