Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00516 ATGCAAGGGCAAAGGAGTAGTGTTGGTTCATTGTCGGAAACCATAAACTTTGAACATGGATCTTCGTCGAATAATCCTGGTAGCCAACCAGTTTACTGGAATAACATGTGGAATCCAGCAGAAAACCGAATACCGGATTATTTGTTGCCTACTACTGATATAAATACGGGATATGTAAGCTCTGTGAGCCATGAGCAACGGAATTTGAGTAGATGGAGCTTAGGTGAACCTAGCTCTTGTGATATGCAAACCGAGGCATTATCTGATGAACAAAAAGGTGAGGTTGGATGGTCTTCAGTGGCTCGTGATGCAGATGGTCCAGTTACAGAAACCCGACTCTGTGAGCCGTCAAATAATCCTACGCTGGGTCATGTGAATTTCAGCCCACTGATTATACAAAATTCCAATTCTAATGCACTTCCTCATAGTCTAAATTTAAATGCAAGTTTTGCTAGTCATGGAGGTGAGAGTAGCCGAGTTAATGAAGGTTCTAACTTGTATAAATCTAGTGGATCGGAAGAAGGGCGGGCTCTATGTTCTAGTGCTTCGGATCCTCTTTTACTTCCTTCTGGAAATAGTGGACTTCCAGTGGTTGCAAATGATGGTAGAGCAGGATCTTCCTTGGATGGACGTCGAGCACCCTGTAAACGAAAAGCTATCGAGGGAAGTGTTACACAGCCCTCTTTAAGTGGAAGCAGTAACTATGCTCAGCATATTGAAAGTGGTGCTGAGCCCACTCTTCCAGTTTTTCCTGGTCGCTACAACACAGGAAGTAGGCTAACCATTCCTGCTCCACCAGCACGAATGAATCAAGCTCCGGTACGTGGTGCAGGCGAAATGACTTCCAACAGCTTCTCTGAGTCAATGGTTGCAGAAAGTTCAGATAGTTCTCAAAGAAACTATCGTATAAGGATTAGTTCATCCAATGCACAAGATTCTTTTGCACCGACTGGAATGACTGTTCGGCATCCCGGGGCCTCATCTTCCCAGCTCCCAGCTAGAATTCTACCTGCTGAGCATGTATTAGACTTGAGGCCAGCACCAGCTGTAGACAATATATCTGCTCAAGGTCAGCCACTTATGATACATGTGCCTGCTTTACCCCGAAGTCTGCAACCATATAGGTGGAATGGGAGCTCTACTTCTAGAAGTGGCGGTTCGTCGAGCTCTGCAGGGGAGAGACAGGTGGTGCAACGTGAGGAGGTGAGACCAAGCAACATGGGAAGAAACGTATCTGAACATCCCATGTTTGTCCCAGCAAACGAGCTGAGGAATTTGGTTCGTAATCCATCAAGTAGAGGTTTAGCATCTTCAAACCTGTCCATTCCTGGAACTGTTGCTTCTACATCCAGGGTTGGTTCAAGTTCAGGGGTCCACCCCCCTTCTGGACCTTGGATGCCTCCTGAGAATAGTCCAACACAGTTTCCTCGAAGGTTAACAGAATATGTTCGTAGGCAGCTATTTTCTTCTGCTACAAACGAGTCCGGTGGTAGGACAAGTAATTATTCACAACGATCCGGTTCTACTTCTGCCCAGGATATGGTTCTTTCATCTGGATCTGGCCGTCGGGGGCACCATTTATTGCAACCAAGGTCCGCATTATGGATGGAAAGAAGAGGTGACACTGGGCTTGGTCTTCCCTATTCATTACGAACCTTGGCTACTTCCGGTGAAGGAAGCGACAATAATAGACTAGTATCTGAGCAGATTCGCAATGTCTTGGGCCTTGTCCGTCGGGGGGAAAGCTTACGAGTTGAGGATGTGATGATCCTGGACCAGTCACTATTTTTCGGGATGGCTGATATTTACGATCGGCACAGGGATATGCGCCTTGACGTTGACAACATGTCGTATGAGGAATTGTTGGCTTTGGAAGAGCGCATTGGAAACGTCAACACTGGACTAAGCGAAGAGACGATTGTTGCTCGACTGAAACGAACGAAGCACGTCAATGCCCCCGAACCACAGGTCGAGGAAGAACCATGTTGTGTTTGTCAGGAGGAATACAAAGAAGGGGAAGACATTGGAATGCTGGACTGCGGGCACAAGTTCCACACACAATGTATCAAGCAATGGCTGATGCAAAAGAATATATGTCCCATCTGCAAAACAACTGGTTTTGCAAGCCGAGAATGA 2136 46.58 MQGQRSSVGSLSETINFEHGSSSNNPGSQPVYWNNMWNPAENRIPDYLLPTTDINTGYVSSVSHEQRNLSRWSLGEPSSCDMQTEALSDEQKGEVGWSSVARDADGPVTETRLCEPSNNPTLGHVNFSPLIIQNSNSNALPHSLNLNASFASHGGESSRVNEGSNLYKSSGSEEGRALCSSASDPLLLPSGNSGLPVVANDGRAGSSLDGRRAPCKRKAIEGSVTQPSLSGSSNYAQHIESGAEPTLPVFPGRYNTGSRLTIPAPPARMNQAPVRGAGEMTSNSFSESMVAESSDSSQRNYRIRISSSNAQDSFAPTGMTVRHPGASSSQLPARILPAEHVLDLRPAPAVDNISAQGQPLMIHVPALPRSLQPYRWNGSSTSRSGGSSSSAGERQVVQREEVRPSNMGRNVSEHPMFVPANELRNLVRNPSSRGLASSNLSIPGTVASTSRVGSSSGVHPPSGPWMPPENSPTQFPRRLTEYVRRQLFSSATNESGGRTSNYSQRSGSTSAQDMVLSSGSGRRGHHLLQPRSALWMERRGDTGLGLPYSLRTLATSGEGSDNNRLVSEQIRNVLGLVRRGESLRVEDVMILDQSLFFGMADIYDRHRDMRLDVDNMSYEELLALEERIGNVNTGLSEETIVARLKRTKHVNAPEPQVEEEPCCVCQEEYKEGEDIGMLDCGHKFHTQCIKQWLMQKNICPICKTTGFASRE 711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3414227 3417089 - Carg26161-RA Car12g00516 158132

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00516 711 SUPERFAMILY RING/U-box 651 705 - -
Car12g00516 711 Pfam Ring finger domain 662 703 IPR001841 -
Car12g00516 711 SMART ring_2 662 702 IPR001841 -
Car12g00516 711 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MBR2-LIKE ISOFORM X1 1 707 - -
Car12g00516 711 MobiDBLite consensus disorder prediction 489 517 - -
Car12g00516 711 ProSiteProfiles Zinc finger RING-type profile. 662 703 IPR001841 -
Car12g00516 711 MobiDBLite consensus disorder prediction 242 300 - -
Car12g00516 711 MobiDBLite consensus disorder prediction 373 416 - -
Car12g00516 711 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 707 IPR045191 GO:0061630
Car12g00516 711 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 625 706 IPR013083 -
Car12g00516 711 CDD RING-H2_TTC3 661 703 - -
Car12g00516 711 MobiDBLite consensus disorder prediction 430 457 - -
Car12g00516 711 MobiDBLite consensus disorder prediction 276 300 - -
Car12g00516 711 MobiDBLite consensus disorder prediction 430 475 - -
Car12g00516 711 MobiDBLite consensus disorder prediction 152 172 - -
Car12g00516 711 MobiDBLite consensus disorder prediction 489 531 - -
Car12g00516 711 MobiDBLite consensus disorder prediction 373 395 - -
Car12g00516 711 MobiDBLite consensus disorder prediction 1 29 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00516 - - - csv:101203243 1239.17
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00570 Car-Chr5:3335002 Car12g00516 Car-Chr12:3414227 5.09E-37 dispersed
Car09g00749 Car-Chr9:4448565 Car12g00516 Car-Chr12:3414227 3.43E-31 dispersed
Car12g00277 Car-Chr12:1833318 Car12g00516 Car-Chr12:3414227 9.67E-37 dispersed
Car12g00516 Car-Chr12:3414227 Car16g00379 Car-Chr16:2336891 1.27E-34 dispersed
Car12g00516 Car-Chr12:3414227 Car05g00146 Car-Chr5:735660 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g742 . . . . . . . . . Cmo12g00503 . . . Car12g00516 . . Cpe07g00492 Bhi04g00371 Tan02g1796 . . Hepe08g1297 . Lcy13g2093 . . . . . . . . . . . . . . Cme03g02064 Blo17g00874 . . Bda01g01607 Bpe02g01796 . Bma01g00659 . . . . Cma12g00560 . . . . . . . . . . . . . . . . . . . . . Chy03g01557 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002893 2 4 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 9 6 2 55
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car12g00516 Car_Chr12 FPKM 6.646186 8.865581 6.518677 6.537859 14.645576 13.063246 15.627814 9.250887 8.732886 9.048436