Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00518 ATGAAGCTTCATCACTTCTCCCCTTGTTCTTGGGATGAGCCCTCTCTCTCCCTTGCTTGCACGAAGCGCTTACGACCTCCTCCGCCCACCTCCGCCGCTTCAACGCTCACCGCTTTCGACCTCAAGACCTTCATCAAACCTGATACTAAGAAAGACCCGTCTTCCCCTCGGACCGGAGTTGTGGAGATGCAACCAGGGGGCACACGGTGGAACCCGACGCAAGAACAGATAGCGATATTGGAGATGCTTTATAAGAGAGGAATGAGGACTCCCAATGCTCAACAGATTGAACAAATTACTGCACAGCTTGGGAAGTACGGGAAGATTGAAGGAAAGAATGTGTTCTATTGGTTTCAGAATCATAAAGCTCGAGAGCGACAGAAGCAGAAGCGCAATACTCTTGGTCTTGCTCACTCCTCCCCCGTAACTCCGACGACAACCATCGTCACGGCCGTCCCCTTCGACCCATCGGGAGGGGAAGATAGTCCGTACAAGAGGAAGTGCATGAACTGGGGGTTTGAATGTTTGGTTGAAGATAGAACTCTGGAGTTATTCCCTTTGCACCCAGAAGGCAGATGA 579 51.3 MKLHHFSPCSWDEPSLSLACTKRLRPPPPTSAASTLTAFDLKTFIKPDTKKDPSSPRTGVVEMQPGGTRWNPTQEQIAILEMLYKRGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQKRNTLGLAHSSPVTPTTTIVTAVPFDPSGGEDSPYKRKCMNWGFECLVEDRTLELFPLHPEGR 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3424539 3425426 - Carg26163-RA Car12g00518 158134

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00518 192 MobiDBLite consensus disorder prediction 46 70 - -
Car12g00518 192 Pfam Homeodomain 68 127 IPR001356 GO:0003677
Car12g00518 192 ProSiteProfiles 'Homeobox' domain profile. 63 128 IPR001356 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00518 - - - cmax:111496401 364.385
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car05g00145 Car12g00518 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00518 Car-Chr12:3424539 Car13g00827 Car-Chr13:8977287 5.55E-29 dispersed
Car12g00518 Car-Chr12:3424539 Car12g00523 Car-Chr12:3454498 6.99E-141 proximal
Car01g00539 Car-Chr1:3188038 Car12g00518 Car-Chr12:3424539 1.25E-31 transposed
Car12g00518 Car-Chr12:3424539 Car05g00145 Car-Chr5:726798 4.71E-74 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g735 . . . . . . . . Cmo05g00169 Cmo12g00505 . . . Car12g00518 Sed11g0934 . Cpe07g00494 Bhi04g00375 Tan02g1791 Cmetu12g0458 . Hepe08g1298 . Lcy13g2095 Cla08g01585 Cam08g2084 Cec08g1665 Cco08g1796 Clacu08g1770 . Cre08g1554 . . Cone17ag0854 Cone20ag0200 . . . Cme03g02065 . . . . . Bpe05g00030 Bma01g00657 Bma05g00042 . . . Cma12g00562 Cma05g00171 Car05g00145 . Cpe11g00141 . . . . . . . . . . . . . . . Lsi08g01489 Csa02g01931 Chy03g01558 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car06g00058 . 4 252 Wox Gene Family AT3G03660 52.5 4.1e-53 205.7
Car14g00419 . 14 245 Wox Gene Family AT3G03660 50.4 9.2e-45 177.9
Car16g01199 . 1 275 Wox Gene Family AT4G35550 51.0 3.9e-71 265.4
Car06g00127 . 26 263 Wox Gene Family AT4G35550 53.7 5.0e-66 248.4
Car09g00039 CCT 1 191 Wox Gene Family AT4G35550 60.5 1.8e-55 213.4
Car01g01590 CCT 1 162 Wox Gene Family AT4G35550 67.5 1.2e-54 210.7
Car06g00127 . 26 165 Wox Gene Family AT1G20700 55.9 3.0e-39 159.1
Car01g01590 CCT 38 169 Wox Gene Family AT1G20700 58.5 8.8e-39 157.5
Car05g00145 CCT 5 170 Wox Gene Family AT1G46480 60.9 7.4e-48 187.6
Car12g00518 CCT 1 134 Wox Gene Family AT1G46480 62.8 1.5e-43 173.3
Car12g00523 . 5 138 Wox Gene Family AT1G46480 61.3 7.2e-43 171.0
Car07g00176 CST 1 392 Wox Gene Family AT2G33880 50.2 1.8e-64 243.8
Car05g00145 CCT 5 170 Wox Gene Family AT1G46480 60.9 7.4e-48 187.6
Car12g00518 CCT 1 134 Wox Gene Family AT1G46480 62.8 1.5e-43 173.3
Car12g00523 . 5 138 Wox Gene Family AT1G46480 61.3 7.2e-43 171.0
Car07g00176 CST 1 392 Wox Gene Family AT2G33880 50.2 1.8e-64 243.8
Car06g00058 . 4 252 Wox Gene Family AT3G03660 52.5 4.1e-53 205.7
Car14g00419 . 14 245 Wox Gene Family AT3G03660 50.4 9.2e-45 177.9
Car16g01199 . 1 275 Wox Gene Family AT4G35550 51.0 3.9e-71 265.4
Car06g00127 . 26 263 Wox Gene Family AT4G35550 53.7 5.0e-66 248.4
Car09g00039 CCT 1 191 Wox Gene Family AT4G35550 60.5 1.8e-55 213.4
Car01g01590 CCT 1 162 Wox Gene Family AT4G35550 67.5 1.2e-54 210.7
Car06g00127 . 26 165 Wox Gene Family AT1G20700 55.9 3.0e-39 159.1
Car01g01590 CCT 38 169 Wox Gene Family AT1G20700 58.5 8.8e-39 157.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005110 2 1 1 2 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4418 PF00046 Homeodomain 1.40E-19 CL0123 Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car12g00518 Car_Chr12 FPKM 18.18568 20.360029 25.745878 24.410065 37.025051 38.112083 36.970024 33.096714 31.820868 32.101604