Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00518 ATGAAGCTTCATCACTTCTCCCCTTGTTCTTGGGATGAGCCCTCTCTCTCCCTTGCTTGCACGAAGCGCTTACGACCTCCTCCGCCCACCTCCGCCGCTTCAACGCTCACCGCTTTCGACCTCAAGACCTTCATCAAACCTGATACTAAGAAAGACCCGTCTTCCCCTCGGACCGGAGTTGTGGAGATGCAACCAGGGGGCACACGGTGGAACCCGACGCAAGAACAGATAGCGATATTGGAGATGCTTTATAAGAGAGGAATGAGGACTCCCAATGCTCAACAGATTGAACAAATTACTGCACAGCTTGGGAAGTACGGGAAGATTGAAGGAAAGAATGTGTTCTATTGGTTTCAGAATCATAAAGCTCGAGAGCGACAGAAGCAGAAGCGCAATACTCTTGGTCTTGCTCACTCCTCCCCCGTAACTCCGACGACAACCATCGTCACGGCCGTCCCCTTCGACCCATCGGGAGGGGAAGATAGTCCGTACAAGAGGAAGTGCATGAACTGGGGGTTTGAATGTTTGGTTGAAGATAGAACTCTGGAGTTATTCCCTTTGCACCCAGAAGGCAGATGA 579 51.3 MKLHHFSPCSWDEPSLSLACTKRLRPPPPTSAASTLTAFDLKTFIKPDTKKDPSSPRTGVVEMQPGGTRWNPTQEQIAILEMLYKRGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQKRNTLGLAHSSPVTPTTTIVTAVPFDPSGGEDSPYKRKCMNWGFECLVEDRTLELFPLHPEGR 192
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
12 3424539 3425426 - Carg26163-RA Car12g00518 158134
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Car12g00518 192 MobiDBLite consensus disorder prediction 46 70 - -
Car12g00518 192 Pfam Homeodomain 68 127 IPR001356 GO:0003677
Car12g00518 192 ProSiteProfiles 'Homeobox' domain profile. 63 128 IPR001356 GO:0003677
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Car05g00145 Car12g00518 CCT
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00518 Car-Chr12:3424539 Car13g00827 Car-Chr13:8977287 5.55E-29 dispersed
Car12g00518 Car-Chr12:3424539 Car12g00523 Car-Chr12:3454498 6.99E-141 proximal
Car01g00539 Car-Chr1:3188038 Car12g00518 Car-Chr12:3424539 1.25E-31 transposed
Car12g00518 Car-Chr12:3424539 Car05g00145 Car-Chr5:726798 4.71E-74 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4418 PF00046 Homeodomain 1.40E-19 CL0123 Car TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00518 - - cmax:111496401 364.385