Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car12g00518 | ATGAAGCTTCATCACTTCTCCCCTTGTTCTTGGGATGAGCCCTCTCTCTCCCTTGCTTGCACGAAGCGCTTACGACCTCCTCCGCCCACCTCCGCCGCTTCAACGCTCACCGCTTTCGACCTCAAGACCTTCATCAAACCTGATACTAAGAAAGACCCGTCTTCCCCTCGGACCGGAGTTGTGGAGATGCAACCAGGGGGCACACGGTGGAACCCGACGCAAGAACAGATAGCGATATTGGAGATGCTTTATAAGAGAGGAATGAGGACTCCCAATGCTCAACAGATTGAACAAATTACTGCACAGCTTGGGAAGTACGGGAAGATTGAAGGAAAGAATGTGTTCTATTGGTTTCAGAATCATAAAGCTCGAGAGCGACAGAAGCAGAAGCGCAATACTCTTGGTCTTGCTCACTCCTCCCCCGTAACTCCGACGACAACCATCGTCACGGCCGTCCCCTTCGACCCATCGGGAGGGGAAGATAGTCCGTACAAGAGGAAGTGCATGAACTGGGGGTTTGAATGTTTGGTTGAAGATAGAACTCTGGAGTTATTCCCTTTGCACCCAGAAGGCAGATGA | 579 | 51.3 | MKLHHFSPCSWDEPSLSLACTKRLRPPPPTSAASTLTAFDLKTFIKPDTKKDPSSPRTGVVEMQPGGTRWNPTQEQIAILEMLYKRGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQKRNTLGLAHSSPVTPTTTIVTAVPFDPSGGEDSPYKRKCMNWGFECLVEDRTLELFPLHPEGR | 192 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 3424539 | 3425426 | - | Carg26163-RA | Car12g00518 | 158134 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car12g00518 | 192 | MobiDBLite | consensus disorder prediction | 46 | 70 | - | - | |
| Car12g00518 | 192 | Pfam | Homeodomain | 68 | 127 | IPR001356 | GO:0003677 | |
| Car12g00518 | 192 | ProSiteProfiles | 'Homeobox' domain profile. | 63 | 128 | IPR001356 | GO:0003677 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Car05g00145 | Car12g00518 | CCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car12g00518 | Car-Chr12:3424539 | Car13g00827 | Car-Chr13:8977287 | 5.55E-29 | dispersed | |
| Car12g00518 | Car-Chr12:3424539 | Car12g00523 | Car-Chr12:3454498 | 6.99E-141 | proximal | |
| Car01g00539 | Car-Chr1:3188038 | Car12g00518 | Car-Chr12:3424539 | 1.25E-31 | transposed | |
| Car12g00518 | Car-Chr12:3424539 | Car05g00145 | Car-Chr5:726798 | 4.71E-74 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 4418 | PF00046 | Homeodomain | 1.40E-19 | CL0123 | Car | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car12g00518 | - | - | cmax:111496401 | 364.385 |