Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car12g00523 | ATGGGATTAACCATGAAGCTTCATCACTTCTCCCCTTGTTCTTGGGATGAACCCTCCCTCTCCCTTGCTTGCACGAAGCGCTTACGTCCTCCTCCGCCCACCTCCGCCACTTCAACGCTCACCGCCTTCGACCTCAAGACCTTCATCAAACCGGATACTAAGAAAGACCCGTCTTCCCCTCGAATAGGAGTTGTGGAGATGCAACCAGGGGGCACGCGGTGGAACCCGACGCAAGAACAGATAGCGATATTGGAGATGCTTTATAGGAGAGGAATGAGGACTCCCAATGCTCAACAAATTGAACAAATTACTGCACAGCTTGGGAAGTACGGGAAGATTGAAGGAAAGAATGTGTTCTATTGGTTTCAGAATCATAAAGCTCGAGAGCGACAGAAGCAGAAGCGCAATACTCTTGGTCTTGCTCACTCCTCCCCCGTAACTCCGACAACGACGACAACCATCGTCACGGCCATCCCCTTCGACCCATCGGGAGGGGAAGATATTCCGTACAAGAGGAAGTGCATGAACTGGGGGTTTGAATGTTTGGTTGAAGATAGAACTCTGGAGTTATTCCCTTTGCACCCAGAAGGCAGATGA | 597 | 50.59 | MGLTMKLHHFSPCSWDEPSLSLACTKRLRPPPPTSATSTLTAFDLKTFIKPDTKKDPSSPRIGVVEMQPGGTRWNPTQEQIAILEMLYRRGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQKRNTLGLAHSSPVTPTTTTTIVTAIPFDPSGGEDIPYKRKCMNWGFECLVEDRTLELFPLHPEGR | 198 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 3454498 | 3455402 | - | Carg27316-RA | Car12g00523 | 158139 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car12g00523 | 198 | Pfam | Homeodomain | 72 | 131 | IPR001356 | GO:0003677 | |
Car12g00523 | 198 | MobiDBLite | consensus disorder prediction | 50 | 73 | - | - | |
Car12g00523 | 198 | ProSiteProfiles | 'Homeobox' domain profile. | 67 | 132 | IPR001356 | GO:0003677 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Car05g00145 | Car-Chr5:726798 | Car12g00523 | Car-Chr12:3454498 | 2.36E-82 | dispersed | |
Car11g00287 | Car-Chr11:1565333 | Car12g00523 | Car-Chr12:3454498 | 4.02E-31 | dispersed | |
Car12g00523 | Car-Chr12:3454498 | Car13g00827 | Car-Chr13:8977287 | 4.20E-30 | dispersed | |
Car12g00518 | Car-Chr12:3424539 | Car12g00523 | Car-Chr12:3454498 | 6.99E-141 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
4419 | PF00046 | Homeodomain | 1.70E-19 | CL0123 | Car | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car12g00523 | - | - | cmax:111496401 | 369.392 |