Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00523 ATGGGATTAACCATGAAGCTTCATCACTTCTCCCCTTGTTCTTGGGATGAACCCTCCCTCTCCCTTGCTTGCACGAAGCGCTTACGTCCTCCTCCGCCCACCTCCGCCACTTCAACGCTCACCGCCTTCGACCTCAAGACCTTCATCAAACCGGATACTAAGAAAGACCCGTCTTCCCCTCGAATAGGAGTTGTGGAGATGCAACCAGGGGGCACGCGGTGGAACCCGACGCAAGAACAGATAGCGATATTGGAGATGCTTTATAGGAGAGGAATGAGGACTCCCAATGCTCAACAAATTGAACAAATTACTGCACAGCTTGGGAAGTACGGGAAGATTGAAGGAAAGAATGTGTTCTATTGGTTTCAGAATCATAAAGCTCGAGAGCGACAGAAGCAGAAGCGCAATACTCTTGGTCTTGCTCACTCCTCCCCCGTAACTCCGACAACGACGACAACCATCGTCACGGCCATCCCCTTCGACCCATCGGGAGGGGAAGATATTCCGTACAAGAGGAAGTGCATGAACTGGGGGTTTGAATGTTTGGTTGAAGATAGAACTCTGGAGTTATTCCCTTTGCACCCAGAAGGCAGATGA 597 50.59 MGLTMKLHHFSPCSWDEPSLSLACTKRLRPPPPTSATSTLTAFDLKTFIKPDTKKDPSSPRIGVVEMQPGGTRWNPTQEQIAILEMLYRRGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQKRNTLGLAHSSPVTPTTTTTIVTAIPFDPSGGEDIPYKRKCMNWGFECLVEDRTLELFPLHPEGR 198
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3454498 3455402 - Carg27316-RA Car12g00523 158139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00523 198 Pfam Homeodomain 72 131 IPR001356 GO:0003677
Car12g00523 198 MobiDBLite consensus disorder prediction 50 73 - -
Car12g00523 198 ProSiteProfiles 'Homeobox' domain profile. 67 132 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00145 Car-Chr5:726798 Car12g00523 Car-Chr12:3454498 2.36E-82 dispersed
Car11g00287 Car-Chr11:1565333 Car12g00523 Car-Chr12:3454498 4.02E-31 dispersed
Car12g00523 Car-Chr12:3454498 Car13g00827 Car-Chr13:8977287 4.20E-30 dispersed
Car12g00518 Car-Chr12:3424539 Car12g00523 Car-Chr12:3454498 6.99E-141 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4419 PF00046 Homeodomain 1.70E-19 CL0123 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00523 - - cmax:111496401 369.392