Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00523 ATGGGATTAACCATGAAGCTTCATCACTTCTCCCCTTGTTCTTGGGATGAACCCTCCCTCTCCCTTGCTTGCACGAAGCGCTTACGTCCTCCTCCGCCCACCTCCGCCACTTCAACGCTCACCGCCTTCGACCTCAAGACCTTCATCAAACCGGATACTAAGAAAGACCCGTCTTCCCCTCGAATAGGAGTTGTGGAGATGCAACCAGGGGGCACGCGGTGGAACCCGACGCAAGAACAGATAGCGATATTGGAGATGCTTTATAGGAGAGGAATGAGGACTCCCAATGCTCAACAAATTGAACAAATTACTGCACAGCTTGGGAAGTACGGGAAGATTGAAGGAAAGAATGTGTTCTATTGGTTTCAGAATCATAAAGCTCGAGAGCGACAGAAGCAGAAGCGCAATACTCTTGGTCTTGCTCACTCCTCCCCCGTAACTCCGACAACGACGACAACCATCGTCACGGCCATCCCCTTCGACCCATCGGGAGGGGAAGATATTCCGTACAAGAGGAAGTGCATGAACTGGGGGTTTGAATGTTTGGTTGAAGATAGAACTCTGGAGTTATTCCCTTTGCACCCAGAAGGCAGATGA 597 50.59 MGLTMKLHHFSPCSWDEPSLSLACTKRLRPPPPTSATSTLTAFDLKTFIKPDTKKDPSSPRIGVVEMQPGGTRWNPTQEQIAILEMLYRRGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQKRNTLGLAHSSPVTPTTTTTIVTAIPFDPSGGEDIPYKRKCMNWGFECLVEDRTLELFPLHPEGR 198
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3454498 3455402 - Carg27316-RA Car12g00523 158139

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00523 198 Pfam Homeodomain 72 131 IPR001356 GO:0003677
Car12g00523 198 MobiDBLite consensus disorder prediction 50 73 - -
Car12g00523 198 ProSiteProfiles 'Homeobox' domain profile. 67 132 IPR001356 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00523 - - - cmax:111496401 369.392
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00145 Car-Chr5:726798 Car12g00523 Car-Chr12:3454498 2.36E-82 dispersed
Car11g00287 Car-Chr11:1565333 Car12g00523 Car-Chr12:3454498 4.02E-31 dispersed
Car12g00523 Car-Chr12:3454498 Car13g00827 Car-Chr13:8977287 4.20E-30 dispersed
Car12g00518 Car-Chr12:3424539 Car12g00523 Car-Chr12:3454498 6.99E-141 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car06g00058 . 4 252 Wox Gene Family AT3G03660 52.5 4.1e-53 205.7
Car14g00419 . 14 245 Wox Gene Family AT3G03660 50.4 9.2e-45 177.9
Car16g01199 . 1 275 Wox Gene Family AT4G35550 51.0 3.9e-71 265.4
Car06g00127 . 26 263 Wox Gene Family AT4G35550 53.7 5.0e-66 248.4
Car09g00039 CCT 1 191 Wox Gene Family AT4G35550 60.5 1.8e-55 213.4
Car01g01590 CCT 1 162 Wox Gene Family AT4G35550 67.5 1.2e-54 210.7
Car06g00127 . 26 165 Wox Gene Family AT1G20700 55.9 3.0e-39 159.1
Car01g01590 CCT 38 169 Wox Gene Family AT1G20700 58.5 8.8e-39 157.5
Car05g00145 CCT 5 170 Wox Gene Family AT1G46480 60.9 7.4e-48 187.6
Car12g00518 CCT 1 134 Wox Gene Family AT1G46480 62.8 1.5e-43 173.3
Car12g00523 . 5 138 Wox Gene Family AT1G46480 61.3 7.2e-43 171.0
Car07g00176 CST 1 392 Wox Gene Family AT2G33880 50.2 1.8e-64 243.8
Car05g00145 CCT 5 170 Wox Gene Family AT1G46480 60.9 7.4e-48 187.6
Car12g00518 CCT 1 134 Wox Gene Family AT1G46480 62.8 1.5e-43 173.3
Car12g00523 . 5 138 Wox Gene Family AT1G46480 61.3 7.2e-43 171.0
Car07g00176 CST 1 392 Wox Gene Family AT2G33880 50.2 1.8e-64 243.8
Car06g00058 . 4 252 Wox Gene Family AT3G03660 52.5 4.1e-53 205.7
Car14g00419 . 14 245 Wox Gene Family AT3G03660 50.4 9.2e-45 177.9
Car16g01199 . 1 275 Wox Gene Family AT4G35550 51.0 3.9e-71 265.4
Car06g00127 . 26 263 Wox Gene Family AT4G35550 53.7 5.0e-66 248.4
Car09g00039 CCT 1 191 Wox Gene Family AT4G35550 60.5 1.8e-55 213.4
Car01g01590 CCT 1 162 Wox Gene Family AT4G35550 67.5 1.2e-54 210.7
Car06g00127 . 26 165 Wox Gene Family AT1G20700 55.9 3.0e-39 159.1
Car01g01590 CCT 38 169 Wox Gene Family AT1G20700 58.5 8.8e-39 157.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005110 2 1 1 2 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4419 PF00046 Homeodomain 1.70E-19 CL0123 Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car12g00523 Car_Chr12 FPKM 2.775583 2.663843 1.644844 2.197982 2.669986 1.27131 3.011083 0.0 0.0 0.0