Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car12g00528 | ATGGCGCCGCCGTATGCGCTTGATGCTCTGTTCTGCCCGGAGGAGCACTGGGAGGACCAAGAACAAGAACAACAACAAAAACGTCGTACTAATTTAACAAACGAGGATCTGTTCTGGGAAAACGATGAACTAATTTCTCTTCTTGCTCGTGAGAAGCCCAATGAACTCTTTCAAATCATTCAGACTAACCCTTCTCTCGCCGCCGCCCGACGAGCCGCCGTCGAGTGGATGCTGAACGTCAATACCCACTACTCCTTCTCTGTTCTCACGGCTGTTCTCGCCGTCGATTACTTCGATAAGTTCTTGTCGTTTTTTCATTTTCAAACAGATAAGCCATGGATGTTTCACCTCGCTGCTGTTGCTTGTCTCTCTCTTGCTGCCAAAGTGGAGGAGACCCATGTGCCTCTTTTGTTGGACCTTCAAGTTGAAGACAGTAGATATCTGTTTGAAGCCAAGACAATCAAGAAAATGGAGCTTCTTGTGCTCTCTACGCTTCAATGGCGGATGAATCCTGTTACCCCATTTTCTTTTGTGGATCATATGTCAAGAAGGCTTGGATTCAACGGCAATATCTGCCGGGAAATTCATTGGTGGTGTGAACGAACTATTCTCTCTGTTATTTTAGAGTCAGATTTCATGTCCTTTCTTCCTTCTGTAATGGCCACCGCCACAATGCTGCACGTTTTCAAAGCAATGGAGCCCCACCTCGACGTTGAATACGATTACCATCTTCTTAACATCCTCAAACTCGACAAGGGGAATGTTGAGCAATGCTGTAAACTAATCTCGGATGCATCGAGAAGAAACAGCCACCATTTTAAAAAACGCAAATTTGGGTCGGTTCCGGGCAGTCCAAACGGTGTCATGGACGTGTCATTCAGCTCCGACAGCTCGAACGACTCGTGGTCGGTGGCTTCGTCGGTTTCATCCTCGCCGGAGCCATTAACAAAGAAAAACAGAGCATTGGATCAAAATTTCGCCGACATTCCTCGCTAG | 996 | 46.89 | MAPPYALDALFCPEEHWEDQEQEQQQKRRTNLTNEDLFWENDELISLLAREKPNELFQIIQTNPSLAAARRAAVEWMLNVNTHYSFSVLTAVLAVDYFDKFLSFFHFQTDKPWMFHLAAVACLSLAAKVEETHVPLLLDLQVEDSRYLFEAKTIKKMELLVLSTLQWRMNPVTPFSFVDHMSRRLGFNGNICREIHWWCERTILSVILESDFMSFLPSVMATATMLHVFKAMEPHLDVEYDYHLLNILKLDKGNVEQCCKLISDASRRNSHHFKKRKFGSVPGSPNGVMDVSFSSDSSNDSWSVASSVSSSPEPLTKKNRALDQNFADIPR | 331 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 3487122 | 3488704 | + | Carg27311-RA | Car12g00528 | 158144 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car12g00528 | 331 | Pfam | Cyclin, C-terminal domain | 172 | 295 | IPR004367 | - | |
| Car12g00528 | 331 | ProSitePatterns | Cyclins signature. | 70 | 101 | IPR006671 | - | |
| Car12g00528 | 331 | MobiDBLite | consensus disorder prediction | 289 | 331 | - | - | |
| Car12g00528 | 331 | MobiDBLite | consensus disorder prediction | 289 | 318 | - | - | |
| Car12g00528 | 331 | Pfam | Cyclin, N-terminal domain | 61 | 170 | IPR006671 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Car09g00219 | Car12g00528 | CCT | |
| Car05g00140 | Car12g00528 | CCT | |
| Car09g00219 | Car12g00528 | ECH | |
| Car05g00140 | Car12g00528 | ECH | |
| Car01g01415 | Car12g00528 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car12g00528 | Car-Chr12:3487122 | Car16g00312 | Car-Chr16:1905764 | 4.36E-100 | dispersed | |
| Car01g01415 | Car-Chr1:12255474 | Car12g00528 | Car-Chr12:3487122 | 7.68E-94 | wgd | |
| Car11g01112 | Car-Chr11:8836464 | Car12g00528 | Car-Chr12:3487122 | 1.80E-70 | wgd | |
| Car12g00528 | Car-Chr12:3487122 | Car05g00140 | Car-Chr5:702502 | 4.52E-169 | wgd | |
| Car12g00528 | Car-Chr12:3487122 | Car07g00680 | Car-Chr7:3474261 | 3.15E-86 | wgd | |
| Car12g00528 | Car-Chr12:3487122 | Car09g00219 | Car-Chr9:1082662 | 8.72E-105 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car12g00528 | K14505 | - | csv:101205442 | 448.358 |