Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car12g00532 | ATGGCTGAGACTCAGAACTCTGTCCGTGTTACTCGTGCTTCCAAGAAGAGAGCTGCCATGGCTTCCATGCCCGAGGATCAGCCCGCCAGTAAAAAGCGGGTGGTTCTTGGAGAGCTTTCGAATATTCAGAACGTTACTGGCTCACTGCCACAGAAGAGGAGGGCCAAATCTCAGATTACCAAATGCAAGCCTAAGAAGAGAACTAAGGTTTGTGTTGCTCCGACGATCAAGACGGCTGTTCTTGAAGATAATGAACCGAAGTTGAGTATTGATGATATCTTGGACGATCCTGAGATGAAGGGACCTTATTCCTCGGATATCTATTCTTATCTTCGCATAATGGAGGCGGAACCGAAAAGAAGGCCGATTCCTAATTACATAGAGAAGATCCAGACGGATGTAAGTGCCAATATGAGAGGTGTTTTGGTTGATTGGATGGTTGAGGTTGCTGAGGAATACAAACTCGGCCCCGATTCTCTGTATCTGTCCATCTCTTACATCGATAGGTACCTATCAATGAACATCCTCAGTAGGCAAAGGCTTCAATTGTTGGGCGTATCTTCAATGCTTATCGCCTCAAAGTACGAAGAGATCACTCCTCCACATGTGGAAGATTTCTGCTACATAACAGATAATACTTACAGAAGGGACGAGGTTGTGAAAATGGAGGCTGATATACTTAAGTCTTTGAACTTTGAAATGGGAAATCCTACTGCCAAGACATTCTTAAGGAGGTTCACTAATATGGCTCAAGAAGATTTCAAAACACCAAGTCTGCAATTGGAATTCCTGGGTCATTACCTTGCTGAGCTTAGCCTACTGGACTATAATTTTGTTAAGTTCTTGCCTTCTTTGGTTGCTGCTTCAGCTGTATTTCTTGCAAAATTCATCATGCGCCCAAAGCTGCATCCTTGGGGTTCAAACATACAACAATACACAGGCTACAAGCCAGCTGATCTGAGGTCGTCTGTGCTTTCTGTTACATGA | 987 | 44.07 | MAETQNSVRVTRASKKRAAMASMPEDQPASKKRVVLGELSNIQNVTGSLPQKRRAKSQITKCKPKKRTKVCVAPTIKTAVLEDNEPKLSIDDILDDPEMKGPYSSDIYSYLRIMEAEPKRRPIPNYIEKIQTDVSANMRGVLVDWMVEVAEEYKLGPDSLYLSISYIDRYLSMNILSRQRLQLLGVSSMLIASKYEEITPPHVEDFCYITDNTYRRDEVVKMEADILKSLNFEMGNPTAKTFLRRFTNMAQEDFKTPSLQLEFLGHYLAELSLLDYNFVKFLPSLVAASAVFLAKFIMRPKLHPWGSNIQQYTGYKPADLRSSVLSVT | 328 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 3524768 | 3526895 | - | Carg27307-RA | Car12g00532 | 158148 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car12g00532 | 328 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - | |
| Car12g00532 | 328 | Pfam | Cyclin, C-terminal domain | 237 | 323 | IPR004367 | - | |
| Car12g00532 | 328 | ProSitePatterns | Cyclins signature. | 139 | 170 | IPR006671 | - | |
| Car12g00532 | 328 | Pfam | Cyclin, N-terminal domain | 106 | 234 | IPR006671 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Car05g00137 | Car12g00532 | CCT | |
| Car09g00224 | Car12g00532 | CCT | |
| Car09g00224 | Car12g00532 | ECH | |
| Car05g00137 | Car12g00532 | ECH | |
| Car01g01408 | Car12g00532 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car12g00532 | Car-Chr12:3524768 | Car17g00774 | Car-Chr17:6828462 | 4.72E-96 | dispersed | |
| Car01g01408 | Car-Chr1:12228308 | Car12g00532 | Car-Chr12:3524768 | 3.88E-139 | wgd | |
| Car11g01125 | Car-Chr11:8994451 | Car12g00532 | Car-Chr12:3524768 | 2.56E-76 | wgd | |
| Car12g00532 | Car-Chr12:3524768 | Car19g00427 | Car-Chr19:6071411 | 2.96E-64 | wgd | |
| Car12g00532 | Car-Chr12:3524768 | Car05g00137 | Car-Chr5:681997 | 0 | wgd | |
| Car12g00532 | Car-Chr12:3524768 | Car09g00224 | Car-Chr9:1270216 | 2.11E-136 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car12g00532 | K06627 | - | csv:101206145 | 558.14 |