Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00538 ATGGAAGCAGCCTCGAATCTCAGTTCCTCACTTCCCCTTTCGCCGTCGCACCACAGGACCACCGCCGTCTTAACTCGTCTTCAGCGGATCGCTTCTTTATCCACAGCCGCCGCCGGAGCCCTCCCGTCGTGTCGTACACATTTGACTCGCCTTCATCAGCGTCGATCCGCGATTTTGCCTCTACGTTGCAATGTGAGGGAGACGGTGGCAGATCAAGAAATGGCGTCTATTGATGTAGAAGACCCACGCATAGCCAAAATCGCCAAGGCCATTCGAGTTATCCCTGATTTTCCCAAACCAGGGATTTTGTTTCAGGACATTACGACGTTGCTTCTTGATACCAAGGCCTTCAGGGACACTATTGATTTGTTCGTGGAGAGGTACAGAGGGAAAGATATCACTGTGGTTGCAGGGATTGAGGCGAGGGGTTTCATTTTTGGACCTCCCATAGCTCTGGCTATTGGTGCAAAATTTGTTCCCATGAGAAAACCCAAGAAGTTGCCTGGTGAAGTCATTTCAGAAGAGTACTCTTTAGAGTATGGAACAGATAAAATTGAGATGCATGTAGGAGCTGTTGAAGCTGGAGAACGCGCTCTTGTGATAGATGATCTCATTGCAACTGGGGGAACCTTGTGTGCAGCAATAAGACTACTTGAGCGAGTTGGCGTGGATGTGGTCGAGTGTGCTTGTGTGATTGAGCTGCACGGACTAAAGGGTCGTGAAAGATTGGGAGACAAACCTCTGTTTGTTCTAGTTAACGCAGCAGCATGA 771 49.29 MEAASNLSSSLPLSPSHHRTTAVLTRLQRIASLSTAAAGALPSCRTHLTRLHQRRSAILPLRCNVRETVADQEMASIDVEDPRIAKIAKAIRVIPDFPKPGILFQDITTLLLDTKAFRDTIDLFVERYRGKDITVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGTDKIEMHVGAVEAGERALVIDDLIATGGTLCAAIRLLERVGVDVVECACVIELHGLKGRERLGDKPLFVLVNAAA 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3573551 3577547 + Carg16396-RA Car12g00538 158154

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00538 256 PANTHER BNAA09G27900D PROTEIN 77 255 - -
Car12g00538 256 CDD PRTases_typeI 121 251 IPR000836 -
Car12g00538 256 Pfam Phosphoribosyl transferase domain 125 242 IPR000836 -
Car12g00538 256 Gene3D - 75 254 IPR029057 -
Car12g00538 256 PANTHER ADENINE PHOSPHORIBOSYLTRANSFERASE 77 255 - -
Car12g00538 256 TIGRFAM apt: adenine phosphoribosyltransferase 88 253 IPR005764 GO:0003999|GO:0005737|GO:0006168
Car12g00538 256 Hamap Adenine phosphoribosyltransferase [apt]. 87 254 IPR005764 GO:0003999|GO:0005737|GO:0006168
Car12g00538 256 SUPERFAMILY PRTase-like 87 250 IPR029057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00538 K00759 APRT, apt; adenine phosphoribosyltransferase [EC:2.4.2.7] - csv:101208231 389.423
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car05g00126 Car12g00538 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00686 Car-Chr6:4078357 Car12g00538 Car-Chr12:3573551 3.20E-97 dispersed
Car12g00538 Car-Chr12:3573551 Car16g01011 Car-Chr16:8582484 1.08E-98 dispersed
Car12g00538 Car-Chr12:3573551 Car05g00126 Car-Chr5:644507 2.41E-123 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g660 . . . . . . . . Cmo05g00147 Cmo12g00534 . . . Car12g00538 Sed10g1207 . . Bhi04g00409 Tan02g1743 Cmetu03g0036 . Hepe08g1328 . Lcy13g2129 Cla08g01616 Cam08g2118 Cec08g1703 Cco08g1826 Clacu08g1803 . Cre08g1585 . . . Cone20ag0230 . . . Cme03g02097 Blo17g00861 . . . . Bpe05g00045 . Bma05g00056 . . . Cma12g00594 Cma05g00145 Car05g00126 . . . . . . . . . . . . . . . . . Lsi08g01520 Csa02g01900 Chy03g01586 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car12g00327 CCT,ECH 33 188 PRT Gene Family AT1G80050 79.5 8.7e-66 246.9
Car05g00320 CCT,ECH 33 189 PRT Gene Family AT1G80050 79.0 1.1e-65 246.5
Car06g00686 . 30 180 PRT Gene Family AT1G80050 76.2 1.5e-62 236.1
Car16g01011 . 30 180 PRT Gene Family AT1G80050 73.5 1.7e-61 232.6
Car05g00126 CCT 30 179 PRT Gene Family AT1G80050 70.7 6.2e-56 214.2
Car12g00538 CCT 103 252 PRT Gene Family AT1G80050 68.7 1.5e-54 209.5
Car12g00327 CCT,ECH 1 148 PRT Gene Family AT5G11160 81.8 1.7e-64 242.7
Car05g00320 CCT,ECH 1 148 PRT Gene Family AT5G11160 81.1 1.9e-63 239.2
Car05g00126 CCT 8 145 PRT Gene Family AT5G11160 71.7 1.8e-53 206.1
Car12g00538 CCT 81 218 PRT Gene Family AT5G11160 71.0 3.0e-53 205.3
Car06g00686 . 8 145 PRT Gene Family AT5G11160 71.7 7.5e-52 200.7
Car16g01011 . 8 145 PRT Gene Family AT5G11160 70.3 8.2e-51 197.2
Car12g00538 CCT 74 256 PRT Gene Family AT1G27450 82.5 9.9e-82 300.1
Car05g00126 CCT 1 183 PRT Gene Family AT1G27450 82.0 1.4e-80 296.2
Car16g01011 . 7 180 PRT Gene Family AT1G27450 71.8 5.1e-70 261.2
Car06g00686 . 7 180 PRT Gene Family AT1G27450 71.8 2.5e-69 258.8
Car12g00327 CCT,ECH 11 183 PRT Gene Family AT1G27450 69.4 1.5e-66 249.6
Car05g00320 CCT,ECH 11 183 PRT Gene Family AT1G27450 69.4 2.0e-66 249.2
Car02g00225 CST 70 556 PRT Gene Family AT2G16570 83.2 2.7e-239 825.1
Car20g00687 CST 5 247 PRT Gene Family AT2G16570 83.6 4.2e-115 412.5
Car20g00686 . 79 284 PRT Gene Family AT2G16570 87.4 6.3e-103 372.1
Car02g00225 CST 72 556 PRT Gene Family AT4G34740 85.0 1.1e-243 839.7
Car20g00687 CST 1 247 PRT Gene Family AT4G34740 83.4 9.0e-118 421.4
Car20g00686 . 79 284 PRT Gene Family AT4G34740 88.9 5.3e-102 369.0
Car02g00225 CST 69 529 PRT Gene Family AT4G38880 73.0 1.9e-194 676.0
Car20g00686 . 57 284 PRT Gene Family AT4G38880 71.7 1.2e-90 331.3
Car20g00687 CST 1 220 PRT Gene Family AT4G38880 75.1 3.4e-90 329.7
Car12g00538 CCT 74 256 PRT Gene Family AT1G27450 82.5 9.9e-82 300.1
Car05g00126 CCT 1 183 PRT Gene Family AT1G27450 82.0 1.4e-80 296.2
Car16g01011 . 7 180 PRT Gene Family AT1G27450 71.8 5.1e-70 261.2
Car06g00686 . 7 180 PRT Gene Family AT1G27450 71.8 2.5e-69 258.8
Car12g00327 CCT,ECH 11 183 PRT Gene Family AT1G27450 69.4 1.5e-66 249.6
Car05g00320 CCT,ECH 11 183 PRT Gene Family AT1G27450 69.4 2.0e-66 249.2
Car12g00327 CCT,ECH 33 188 PRT Gene Family AT1G80050 79.5 8.7e-66 246.9
Car05g00320 CCT,ECH 33 189 PRT Gene Family AT1G80050 79.0 1.1e-65 246.5
Car06g00686 . 30 180 PRT Gene Family AT1G80050 76.2 1.5e-62 236.1
Car16g01011 . 30 180 PRT Gene Family AT1G80050 73.5 1.7e-61 232.6
Car05g00126 CCT 30 179 PRT Gene Family AT1G80050 70.7 6.2e-56 214.2
Car12g00538 CCT 103 252 PRT Gene Family AT1G80050 68.7 1.5e-54 209.5
Car16g01011 . 6 97 PRT Gene Family AT4G22570 87.0 5.2e-43 170.6
Car06g00686 . 5 104 PRT Gene Family AT4G22570 78.0 5.8e-42 167.2
Car05g00126 CCT 5 97 PRT Gene Family AT4G22570 80.6 3.5e-39 157.9
Car12g00538 CCT 80 170 PRT Gene Family AT4G22570 81.3 1.3e-38 156.0
Car05g00320 CCT,ECH 11 100 PRT Gene Family AT4G22570 78.9 2.5e-37 151.8
Car12g00327 CCT,ECH 11 100 PRT Gene Family AT4G22570 78.9 2.5e-37 151.8
Car06g00686 . 1 96 PRT Gene Family AT4G12440 81.3 1.1e-39 159.5
Car16g01011 . 1 96 PRT Gene Family AT4G12440 81.3 2.5e-39 158.3
Car12g00538 CCT 74 169 PRT Gene Family AT4G12440 78.1 1.8e-37 152.1
Car05g00126 CCT 1 96 PRT Gene Family AT4G12440 78.1 3.0e-37 151.4
Car05g00320 CCT,ECH 4 99 PRT Gene Family AT4G12440 78.1 3.9e-37 151.0
Car12g00327 CCT,ECH 4 99 PRT Gene Family AT4G12440 78.1 3.9e-37 151.0
Car12g00327 CCT,ECH 1 148 PRT Gene Family AT5G11160 81.8 1.7e-64 242.7
Car05g00320 CCT,ECH 1 148 PRT Gene Family AT5G11160 81.1 1.9e-63 239.2
Car05g00126 CCT 8 145 PRT Gene Family AT5G11160 71.7 1.8e-53 206.1
Car12g00538 CCT 81 218 PRT Gene Family AT5G11160 71.0 3.0e-53 205.3
Car06g00686 . 8 145 PRT Gene Family AT5G11160 71.7 7.5e-52 200.7
Car16g01011 . 8 145 PRT Gene Family AT5G11160 70.3 8.2e-51 197.2
Car04g02379 . 1 170 PRT Gene Family AT1G71750 58.9 2.8e-58 222.2
Car09g00940 . 16 474 PRT Gene Family AT1G55810 83.7 3.5e-221 764.6
Car11g01317 . 19 482 PRT Gene Family AT1G55810 75.1 3.6e-202 701.4
Car01g00359 . 19 288 PRT Gene Family AT1G55810 65.6 1.3e-98 357.5
Car01g00358 . 2 190 PRT Gene Family AT1G55810 83.1 6.6e-87 318.5
Car09g00940 . 71 473 PRT Gene Family AT3G27440 76.9 2.4e-184 642.1
Car11g01317 . 80 482 PRT Gene Family AT3G27440 75.4 9.5e-181 630.2
Car01g00358 . 2 190 PRT Gene Family AT3G27440 79.9 6.8e-86 315.1
Car01g00359 . 80 288 PRT Gene Family AT3G27440 68.7 4.3e-80 295.8
Car11g01317 . 1 482 PRT Gene Family AT3G27190 86.5 9.4e-249 856.3
Car09g00940 . 3 473 PRT Gene Family AT3G27190 71.4 5.6e-201 697.6
Car01g00359 . 1 288 PRT Gene Family AT3G27190 80.4 2.7e-131 466.1
Car01g00358 . 2 190 PRT Gene Family AT3G27190 91.5 4.7e-99 359.0
Car03g00353 . 4 290 PRT Gene Family AT3G53900 66.2 3.8e-107 385.2
Car09g00940 . 1 474 PRT Gene Family AT4G26510 81.7 3.4e-227 784.6
Car11g01317 . 7 482 PRT Gene Family AT4G26510 76.1 1.1e-212 736.5
Car01g00359 . 11 288 PRT Gene Family AT4G26510 67.1 1.1e-103 374.4
Car01g00358 . 2 190 PRT Gene Family AT4G26510 84.1 2.4e-92 336.7
Car11g01317 . 1 482 PRT Gene Family AT5G40870 86.5 7.3e-249 856.7
Car09g00940 . 44 476 PRT Gene Family AT5G40870 77.4 7.4e-201 697.2
Car01g00359 . 1 288 PRT Gene Family AT5G40870 80.8 8.0e-131 464.5
Car01g00358 . 2 190 PRT Gene Family AT5G40870 92.1 1.3e-99 360.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000311 4 6 3 5 5 4 7 4 4 4 4 4 7 4 4 7 4 6 1 4 4 4 4 5 4 4 4 10 6 3 139
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car12g00538 Car_Chr12 FPKM 124.242607 140.764786 437.346619 429.010406 56.871174 66.393059 52.454433 7.404635 6.445945 6.921141