Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00540 ATGGGGACGGACAGTCCCGCTAATTTTACTTATATGGGCCGGACCTTTGATGATCTCACCAACGGTCATAGTTCTGGGGCGTTTAGCGACTGTAATAGTGATAGATCCGGGGAATTTCCCACGGCGGCGTCGCAGGGCCGTCGGCTTTTGATTGCTTGTGCTTCTGATAACTCCGACGACCTAATTCGCCAACTGGTTATGGACCTCGAGTCCTGTTCGATTGAGGAGCAGAAGCAAGCGGCTATGGAGATTAGACTTCTCGCTAAGAACAAACCGGAGAATCGATTGAAGATCGCGAAAGCTGGAGCGGTGAGGCCGTTGATTTCGTTGATATCGTGTTCGGATCCGCAGCTTCAAGAGTACGGCGTGACGGCGATTTTGAATCTCTCGTTATGCGATGAGAACAAGGAGCAAATAGCGGCGTCTGGTGCGATTAAGCCTCTGGTTCGAGCGCTGATGTCGGGAACTCCTACGGCGAAGGAGAACGCCGCTTGTGCTTTACTACGACTATCGCAAATGGAGGAGAACAAGATTGCAATCGGACGGTGCGGAGCGATTCCGCTTTTGGTGAATCTGTTAGAGAACGGCGGATTTCGCGGAAAGAAGGACGCATCGACGGCTCTGTATTCACTGTGCTCGGTTAAGGAAAACAAAATCAGAGCAGTAAAAGCAGGAATCATGAGGCCGTTAGTGGAATTAATGGCGGATTTCGGGTCAAACATGGTGGATAAGTCGGCGTTCGTGTTGAGCGTATTGGTATCGTTGTCAGAGGCGAGGACGGCGCTGGTAGAAGAAGGCGGAATTCCGGTACTAGTGGAATTAGTTGAAGACGGAACACAGCGACAAAAGGAGATCGCGGCGGTGATTTTGCTGCAGGTTTGCGAGGACAGTGTCCTTTACCGTACAATGGTAGCCCGTGAAGGAGCAATCCCGCCGCTAATCGCCTTGACACAGTCCGGCACCAATCGCGCCAAACAAAAGGCGGAGAAACTGATAGAGCTTCTACGGCAACCAAGATCCGGCAACTGCGCTGCCACCACCTCAGATGTGTCAGTCTAA 1059 51.84 MGTDSPANFTYMGRTFDDLTNGHSSGAFSDCNSDRSGEFPTAASQGRRLLIACASDNSDDLIRQLVMDLESCSIEEQKQAAMEIRLLAKNKPENRLKIAKAGAVRPLISLISCSDPQLQEYGVTAILNLSLCDENKEQIAASGAIKPLVRALMSGTPTAKENAACALLRLSQMEENKIAIGRCGAIPLLVNLLENGGFRGKKDASTALYSLCSVKENKIRAVKAGIMRPLVELMADFGSNMVDKSAFVLSVLVSLSEARTALVEEGGIPVLVELVEDGTQRQKEIAAVILLQVCEDSVLYRTMVAREGAIPPLIALTQSGTNRAKQKAEKLIELLRQPRSGNCAATTSDVSV 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3592140 3593561 - Carg16394-RA Car12g00540 158156

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00540 352 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 102 144 IPR000225 GO:0005515
Car12g00540 352 Pfam Armadillo/beta-catenin-like repeat 92 130 IPR000225 GO:0005515
Car12g00540 352 Pfam Armadillo/beta-catenin-like repeat 174 213 IPR000225 GO:0005515
Car12g00540 352 Pfam Armadillo/beta-catenin-like repeat 133 171 IPR000225 GO:0005515
Car12g00540 352 PANTHER U BOX DOMAIN-CONTAINING 1 345 - -
Car12g00540 352 SUPERFAMILY ARM repeat 59 335 IPR016024 -
Car12g00540 352 SMART arm_5 91 131 IPR000225 GO:0005515
Car12g00540 352 SMART arm_5 255 295 IPR000225 GO:0005515
Car12g00540 352 SMART arm_5 173 213 IPR000225 GO:0005515
Car12g00540 352 SMART arm_5 214 254 IPR000225 GO:0005515
Car12g00540 352 SMART arm_5 132 172 IPR000225 GO:0005515
Car12g00540 352 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 4-LIKE ISOFORM X1 1 345 - -
Car12g00540 352 Gene3D - 41 201 IPR011989 -
Car12g00540 352 Gene3D - 202 348 IPR011989 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00540 - - - csv:101208714 632.098
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car05g00123 Car12g00540 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00540 Car-Chr3:5329860 Car12g00540 Car-Chr12:3592140 3.61E-95 dispersed
Car07g00299 Car-Chr7:1544908 Car12g00540 Car-Chr12:3592140 4.14E-93 dispersed
Car12g00540 Car-Chr12:3592140 Car20g00844 Car-Chr20:5912330 5.53E-84 dispersed
Car12g00540 Car-Chr12:3592140 Car05g00123 Car-Chr5:628004 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g651 . . . . . . . . Cmo05g00143 Cmo12g00537 . . . Car12g00540 Sed10g1203 . Cpe07g00515 Bhi04g00413 Tan02g1737 Cmetu03g0693 . Hepe08g1331 . Lcy13g2131 Cla08g01619 Cam08g2121 Cec08g1706 Cco08g1830 Clacu08g1806 . Cre08g1588 . . Cone17ag0886 Cone20ag0233 . . . Cme03g02100 . . . . . . . . . . . Cma12g00597 Cma05g00141 Car05g00123 . Cpe11g00122 . . . . . . . . . . . . . . . Lsi08g01525 Csa02g01897 Chy03g01589 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009336 0 1 1 2 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car12g00540 Car_Chr12 FPKM 144.268661 171.016113 199.651352 221.073196 37.070488 37.106865 35.643143 5.47149 2.946003 4.935177