Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00543 ATGTCCTCTTTGGCAACATCACACATGCTGATTGCTGCTGGAACGGAAGATGTTCAAGTCCGCCTTTGTGATATTTCATCGGGAGCATTTTCTCACACCTTATCTGGACATCGTGATGGTGTAATGAGTGTAGAATGGTCAGCTTCTAGCGAGTGGGTTTTGATTACTGGCGGATGTGATGGAGCAATTCGTTTTTGGGACATCAGACGAGCTGGATGTTTTCGTGTGCTAGATCAGTCTCAATCCCAGCTCGGGCGACGTCCACCTATTTCAGGATGGACTGCAAATAAGCTATCAACATCTAAGTCCCACTTGGCCAGCCAAGGTTCAAATATGAAATCTCGTATACTTCATAAGAAACTAGCCAATGGAAACGCAACAAAGCCATCATCTACTACAGGTAAACTGCCAGCTAAGGGATCCACAAGGCAGAGGCTACACCCAGGGCTTTTGTCCAGCCAGGATCGAGCAGTTTCTCACTACGGTGCTGTTACTGGATTAAAAGTAACTGGAGATGGCATGTACCTTCTCAGTGCAGGTTCTGATTCAAGGTTAAAGTTGTGGGATGTCGAATCCGGGTGTAATACGCTCGTGAATTATGAAACCGTGAGGTTACATACCAATAAGCCGTTGCAATTAGCCACATCTCAAGACTCAGCCCTTGTATTTGCTCCATGCATGGCAAATATTAAAGCATTTGATATGTGGACAGGGAAGGCATCCCTGACGCTCAGCGGCCATTACGAAGCTGTGAACTGTTGCTTGTATAGTTTCCAGGATCAGGAACTGTACACTGGTGGCAACGATAGGCAAATTCTCGTCTGGTCACCATCCCGGGACTCTACCGAACTGGATTGGGAATCCAGTGCAGACAAAGATAACTGGAGCGACTGA 894 46.76 MSSLATSHMLIAAGTEDVQVRLCDISSGAFSHTLSGHRDGVMSVEWSASSEWVLITGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPISGWTANKLSTSKSHLASQGSNMKSRILHKKLANGNATKPSSTTGKLPAKGSTRQRLHPGLLSSQDRAVSHYGAVTGLKVTGDGMYLLSAGSDSRLKLWDVESGCNTLVNYETVRLHTNKPLQLATSQDSALVFAPCMANIKAFDMWTGKASLTLSGHYEAVNCCLYSFQDQELYTGGNDRQILVWSPSRDSTELDWESSADKDNWSD 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3602392 3606241 - Carg16391-RA Car12g00543 158159

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00543 297 ProSiteProfiles Trp-Asp (WD) repeats profile. 157 198 IPR001680 GO:0005515
Car12g00543 297 MobiDBLite consensus disorder prediction 121 146 - -
Car12g00543 297 MobiDBLite consensus disorder prediction 124 139 - -
Car12g00543 297 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 244 276 - -
Car12g00543 297 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 157 193 - -
Car12g00543 297 ProSitePatterns Trp-Asp (WD) repeats signature. 176 190 IPR019775 -
Car12g00543 297 ProSiteProfiles Trp-Asp (WD) repeats profile. 34 76 IPR001680 GO:0005515
Car12g00543 297 Pfam WD domain, G-beta repeat 241 276 IPR001680 GO:0005515
Car12g00543 297 Pfam WD domain, G-beta repeat 159 189 IPR001680 GO:0005515
Car12g00543 297 Pfam WD domain, G-beta repeat 31 67 IPR001680 GO:0005515
Car12g00543 297 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 34 69 - -
Car12g00543 297 ProSiteProfiles Trp-Asp (WD) repeats profile. 244 276 IPR001680 GO:0005515
Car12g00543 297 ProSitePatterns Trp-Asp (WD) repeats signature. 54 68 IPR019775 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00543 K10570 ERCC8, CKN1, CSA; DNA excision repair protein ERCC-8 - csv:101209203 566.614
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00543 Car-Chr12:3602392 Car14g00981 Car-Chr14:7112540 7.54E-10 dispersed
Car12g00543 Car-Chr12:3602392 Car03g00788 Car-Chr3:6546732 4.95E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g648 . . . . . . . . . Cmo12g00539 . . . Car12g00543 . . Cpe07g00517 Bhi04g00418 Tan02g1734 Cmetu03g0611 . Hepe08g1335 . Lcy13g2133 Cla08g01622 Cam08g2124 Cec08g1709 Cco08g1833 Clacu08g1810 . Cre08g1591 . . Cone17ag0887 Cone20ag0234 . . . Cme03g02103 . . . . . . . . . . . Cma12g00599 . . . . . . . . . . . . . . . . . . . Lsi08g01528 Csa02g01894 Chy03g01592 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007829 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 0 6 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car12g00543 Car_Chr12 FPKM 7.826087 7.422649 56.4813 50.441734 26.538244 33.281292 23.60475 0.776177 1.40736 0.851516