Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00549 ATGCCGATGTACCAGCCGTCTACTTGGAGAGCAGGGAATCCCAAGCTTGTAGTAGCTTGCGGAGCGCAGATTCTAGATCTGGAAACTGTCGTCAAAGATGGGATTCTCGGCGGCGGTGGCGGCGGTGGCGGTGGCGGTGGGGAGAAGTTAGATCTGAAGGAGATGATTGTGGAGCTGGAATCGTCAATAGAGGTCCCATCGGTGTTCATTTGCCCAATTTCTCTCGAGCCGATGCAAGACCCGGTGACACTCTGTTCTGGGCAGACCTACGAGCGGTGCAACATTCAGAAATGGTTCTCTTTAGGCCATTTGACTTGCCCCACAACAATGCAAGAGCTTTGGGACGATTCCCTCACACCCAATCGGACCCTTCACCAGTTGATTCACACCTGGTTTTCGCAGAAGTTCTTCGCGTTCAAGAAGAAATCAGAGGACGTTCAGGGGAGAGTAACAGAGCTTTTGGATTCATTGAAGAAGGTCAAGGGTCAAGCTAGAGTTCAGTCCCTGAAAGATCTCCGGCATGTCGTCGCCGCCCATTCCTCCGCCAAGAAGATGGTGGTCGACAACGGCGGCGTGGCTGTAATCTCTTCTCTTTTGGGTTCTTTCACTTCCCACGCAGTTGGGTCGGAAGCCGTGGGGATTCTCGTAAATTTGGATCTCGATTCGGAGTTAAAGAACAATTTGATTCAACCCACAAGAATATCACTAATTGCAGATATTTTAAACGAAGGCTCCATCGAAACCAAGATCAATTGCACGAAATTCATCAAGAAATTAATGGACGGTGACGATTCAAGAACAGAGAGCGTTTCAAGTTTGAGTTTACTCGTGGGATTGTTAAGAATGGTGAAGGATCAAAAACACCCAAATGGGGTAACCGCCGGACTTAGTTTACTCCGATCGCTCTGTTCAAACGAATCGATAAAGAAGCAACTGGTAAGCATCGGCGCCGTCGGGAAACTCGGCGGTGCTCTGTCCAGTTTCATCGGCGATGGGTTGGAATCAGCGCTTTACATTCTCGACGGTTTGTCGTCTCTTCCAGAGGGAAGATTAGCGTTGAAAGATTGTGAAGAAACGATTAAGAATTTGGTGAAATTATTGATGAAAGTATCTGAGATTTGTACTGAATTTGCGTTGTCAATTTTATGGGCGGTTTTCAAGGTGGCGCCGGAGGAATGCGCGGTGGTTGCGGTGGATGCAGGATTGGCGGCGAAGTTGCTGCTTGTGATACAAAGTGGGTGCAATAAAGAGGCACACCTCTGCCTCTCCTCCCTTGCAAACATCTTCACGACCCTTTTGATGAGTGATTTGGCTGATGTCGAGGGGGGTGGCGGTGGGCGTTGTGGTGATTGGACGGGCTTCGGCGGAGGAGGAGAGAATGGACATTGTTATGAGTGCTGCGATGGTGAAGACAGCCACCAGCTTCGACATCTTCACCTGGAGTTGAGTCTTGAAAATGAATGCGGTGAAGCCGTGGAGGATGCCTGTTTTGTTGGGGGGGTTTTATAA 1509 49.44 MPMYQPSTWRAGNPKLVVACGAQILDLETVVKDGILGGGGGGGGGGGEKLDLKEMIVELESSIEVPSVFICPISLEPMQDPVTLCSGQTYERCNIQKWFSLGHLTCPTTMQELWDDSLTPNRTLHQLIHTWFSQKFFAFKKKSEDVQGRVTELLDSLKKVKGQARVQSLKDLRHVVAAHSSAKKMVVDNGGVAVISSLLGSFTSHAVGSEAVGILVNLDLDSELKNNLIQPTRISLIADILNEGSIETKINCTKFIKKLMDGDDSRTESVSSLSLLVGLLRMVKDQKHPNGVTAGLSLLRSLCSNESIKKQLVSIGAVGKLGGALSSFIGDGLESALYILDGLSSLPEGRLALKDCEETIKNLVKLLMKVSEICTEFALSILWAVFKVAPEECAVVAVDAGLAAKLLLVIQSGCNKEAHLCLSSLANIFTTLLMSDLADVEGGGGGRCGDWTGFGGGGENGHCYECCDGEDSHQLRHLHLELSLENECGEAVEDACFVGGVL 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3650535 3654797 + Carg16385-RA Car12g00549 158165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00549 502 Pfam U-box domain 65 135 IPR003613 GO:0004842|GO:0016567
Car12g00549 502 ProSiteProfiles U-box domain profile. 64 138 IPR003613 GO:0004842|GO:0016567
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car05g00111 Car12g00549 CCT
Car09g00253 Car12g00549 CCT
Car01g01385 Car12g00549 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00549 Car-Chr12:3650535 Car04g00454 Car-Chr4:2568607 6.46E-37 dispersed
Car01g01385 Car-Chr1:12117447 Car12g00549 Car-Chr12:3650535 0 wgd
Car12g00549 Car-Chr12:3650535 Car05g00111 Car-Chr5:584617 0 wgd
Car12g00549 Car-Chr12:3650535 Car09g00253 Car-Chr9:1395177 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00549 - - csv:101211594 676.781