Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00552 ATGGAGAAAATCTGCGTTGCTGTTCGTTTGAGGCCATCTGTATCTCAAGATTCAATCCGTGGAACGTACTGGAAGATCGACGACAATCGAATTTCGCTTCACAGAGCTCACGACACGCCAATCTCCGGCAATTCCTTCGCTTTTGATCATGTGTTGGACGAAAGCTGTACGAATGGTAGTGTTTACGAACTTGTTGTTAAGGATATTATTCATGCTGCTGTTGAAGGTTTTAATGGAACCGCTTTCGCTTATGGACAGACCAGTAGTGGTAAAACGTTCACCATGAATGGTTCTGAAAGTGATGCAGGAGTTATTCACAGAGCTGTGAAAGACGTGTTTGAAAAAATTAACACGATGTCAGATCGAGAATTTCTGATTCGAGTTTCCTACATGGAAATTTATAACGAAGAAATTAATGATCTATTAGCAGTCGAGAACAATAAGTTGCCAATTCATGAGAGCCTGGAGCGTGGAATATTTGTTGCAGGTCTCAAGGAGGAAATCGTCAATAATGCTGATCAAGTTTTAAAGCTCATCGAGCAGGGTGAAGTAAATAAACACTTTGGTGAAACAAATATGAATGCCAGGAGTAGTAGGTCGCACACAATATTCAGAATGGTAATTGAAAGCAAGGGGAAGGACACCGCTGAGACTTCGAGTGCTGATTCCATACGTGTCTCTGTATTGAATTTGGTAGACTTAGCTGGGTCTGAGCGAATTGCTAAAACTGGAGCTGAAGGAACACGTTTGAAAGAGGGCAAACATATTAATAAGAGTTTAATGATTCTTGGGAACGTTATCAATAAGCTAAGCGAGGGGGTTAGGCAGAGGGGACACATTCCCTATCGAGACAGTAAGCTGACGCGCATACTCCAACCAGCCCTGGGTGGTAATGCTAAAACTTCAATAATATGCACTATAGCTCCAGAAGAGGTACATATAGAAGAAACAAAAGGAACTCTCCAGTTTGCTAGCAGAGCAAAGCGCATCACCAATTGTGTTCAAGTGAATGAGATTTTGACGGATGCAGCTTTATTGAAGCGTCAGAATCAAGAGATAGAGGAACTGCGTAAAAAACTTCAGGGATCACATGCGGAAGTACTTGAGCAGGAGGTTTTGAAGTTGAGGAACGATTTGTTGAAGTATGAACTTGAACGTGAAAACTTGCAAATGGAACTTGAAGAGGAGAGGAATTCACACAAAGAACGTGATCAACGTATCAGGGAGCAACAGATGAAAATAGAAAGTCTCAATAGTCTTGTCAATCTTTCGGATTCTGCACAAAACTCCAGTCAAAGTCGAGAACAAGGTTCTTTGAAAAATACTCTCAAGGAAGATTTCAGTGGCAGTTGTAATAAAAGCCTTGAAGATGGATTTGTAACACCCTTTTTCAAGGCAGCTCCTAATGCCTTTGTTGCCAGGCGATCTAATTATTCCATGCCTCCTGAGTGTAGCCCTCTTCCGGATACTTTTAGCAACGTTGCCGATGAGGATACTTGGTTGAAATTGAATAAAGGCTTTGTAGCTGATCTTGATTCACTTCAAACGACTCCTGCGATAAAAGTGCAATCGTTTCCATTTAATGATCTAACTCCTGGTCAGGGTCTCTCCAATGAGAACCATAAACAGGAGCTTCAAAATCTCGAGAGACAACTGGAGCATGCCATCATGGAGAAAAATAAACTTCAGGAAAAGCATGAGAAGCAAGTTCTTGTAAACGATAAACTAATGGCAGAGATATCAGAGCTTCAACAAGAAGCACAAGTAATCAAGGAACTTCCGCAAAAGATGTTCAATTCTTTGGCGATTTGTAAAGATGTTTACATGGACATCCTATCTTCCCTTAAGAATACCACACATGACGAGAAATCATCAACTGTAAAATTGCTATCAAGCACCGGCGAAATTGGAACATGCCTTTTTACTACTCTGGAAGCTCATTTAACTACAGCCATGAATGGACAGAGTGGTCTCCCAGTGAATGATTCACTTAATCAAGAGTTTCACAATTTACTTCGTTCGAGGGTGAGTAGCATAATAGAATCTCTTGTGTCATCAGAAACATCCATTGTTGTTGGTTGTGAGCAAACGATGGATCCCTCGAGCACTCATCAGTGCAAGGGATGTGCTGAGGACGACTTATGGAAGGAAAGGTTGAGTACTGAACTTGATGATATCAGGAAAAGATGCCATGGCCTCGAGAATGAGCTAGCATCCAACAACCAACTCTTGGAGTCATCGAAGCAACAATATGACAACTTAGAAAGAGAATTCAAGGTTGTGAAGGATGAAAGAGAGTCTTTGCATAAAATGGTCTCTGAATCTGTTCAGAAATTGAAGGTGGAGAAGGAGCAGAAAGAAACCGTACTGAAGGAACTGATCACTGAAATCACGAGACGAAAAGATCTAGAAGAAGGGATTAAGCGATTCAGTGCTGCATTTGCCTCTAGACACAGATCATTCATGTCATTCAGCAGCGAGGTAAGGTCCAAAACCGAGGAACTGAAGACCCAGAATCCGGCTGTTGCTGTACCTGTTCCCAAATCTCTTGGGGGTTGA 2559 41.7 MEKICVAVRLRPSVSQDSIRGTYWKIDDNRISLHRAHDTPISGNSFAFDHVLDESCTNGSVYELVVKDIIHAAVEGFNGTAFAYGQTSSGKTFTMNGSESDAGVIHRAVKDVFEKINTMSDREFLIRVSYMEIYNEEINDLLAVENNKLPIHESLERGIFVAGLKEEIVNNADQVLKLIEQGEVNKHFGETNMNARSSRSHTIFRMVIESKGKDTAETSSADSIRVSVLNLVDLAGSERIAKTGAEGTRLKEGKHINKSLMILGNVINKLSEGVRQRGHIPYRDSKLTRILQPALGGNAKTSIICTIAPEEVHIEETKGTLQFASRAKRITNCVQVNEILTDAALLKRQNQEIEELRKKLQGSHAEVLEQEVLKLRNDLLKYELERENLQMELEEERNSHKERDQRIREQQMKIESLNSLVNLSDSAQNSSQSREQGSLKNTLKEDFSGSCNKSLEDGFVTPFFKAAPNAFVARRSNYSMPPECSPLPDTFSNVADEDTWLKLNKGFVADLDSLQTTPAIKVQSFPFNDLTPGQGLSNENHKQELQNLERQLEHAIMEKNKLQEKHEKQVLVNDKLMAEISELQQEAQVIKELPQKMFNSLAICKDVYMDILSSLKNTTHDEKSSTVKLLSSTGEIGTCLFTTLEAHLTTAMNGQSGLPVNDSLNQEFHNLLRSRVSSIIESLVSSETSIVVGCEQTMDPSSTHQCKGCAEDDLWKERLSTELDDIRKRCHGLENELASNNQLLESSKQQYDNLEREFKVVKDERESLHKMVSESVQKLKVEKEQKETVLKELITEITRRKDLEEGIKRFSAAFASRHRSFMSFSSEVRSKTEELKTQNPAVAVPVPKSLGG 852
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3668374 3673633 + Carg16382-RA Car12g00552 158168

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00552 852 Coils Coil 336 410 - -
Car12g00552 852 Coils Coil 716 771 - -
Car12g00552 852 Pfam Kinesin motor domain 28 330 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Car12g00552 852 ProSitePatterns Kinesin motor domain signature. 227 238 IPR019821 GO:0003777|GO:0005524|GO:0007018
Car12g00552 852 Coils Coil 776 796 - -
Car12g00552 852 MobiDBLite consensus disorder prediction 832 852 - -
Car12g00552 852 ProSiteProfiles Kinesin motor domain profile. 3 330 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Car12g00552 852 Coils Coil 538 593 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00552 K11498 CENPE; centromeric protein E - csv:101212317 1310.05
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00552 Car-Chr12:3668374 Car14g00470 Car-Chr14:2485385 1.18E-167 dispersed
Car14g00295 Car-Chr14:1407770 Car12g00552 Car-Chr12:3668374 1.07E-68 dispersed
Car19g00536 Car-Chr19:6933998 Car12g00552 Car-Chr12:3668374 1.27E-63 dispersed
Car12g00552 Car-Chr12:3668374 Car20g00700 Car-Chr20:4008348 1.26E-93 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g616 . . . . . . . . . Cmo12g00547 . . . Car12g00552 . . Cpe07g00529 Bhi04g00452 . . . . . . Cla08g01638 Cam08g2142 Cec08g1729 Cco08g1849 Clacu08g1830 . Cre08g1613 . . Cone17ag0899 Cone20ag0241 . . . Cme03g02122 . . . . . . . . . . . Cma12g00609 . . . . . . . . . . . . . . . . . . . Lsi08g01544 Csa02g01874 Chy03g01612 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012517 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 0 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car12g00552 Car_Chr12 FPKM 15.007347 17.566021 16.08741 18.250563 19.983665 17.864429 20.516941 20.518993 20.039276 19.872187