Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00553 ATGGATTTTGGAGCGGTGGGTTTTGATGGGTTGGTGGTGGGTTCATCGGATATCTCTGGTTTCTCTTCAGATCCTGAAATGAAGCAGAAATGGTACGATTCTGCCTCTGTTTCTGGGTTTTTGCACAAACAGGAGCGATCTGGCAGTGGCGGTGTAGCTGAAATGGAGGATTTGAGAGTCTCTAAGCTCCCTAAAACGTCTGCTTCTTCTTTGCTCAGATCTAATTCCCCTTTCTTTGTCTCTGATTCTAACCAAAATCATCACCAAATGCTCTGTTTTTCATCGCCGAAAGCAGAGCCTCCTCGACTTGATAAGACAGCTTCTCTCTCAGCTGCTTCCGCTAATTTCGTCCGATCCTCCGCCCCGAGAAATGCAGGCGGCAGTTATGGAGGTTTGAACGGTGGAAGCATGCACGGCGGTGGGTTTATAGGTGTTAGAGCTCCGTTCACTCCATCTCAATGGATGGAGCTGGAACATCAGGCTTTGATCTACAAATACATTACTGCTAATGTCCATGTTCCTTCTAATTTGCTCATTCCCATCAGAAAAGCGCTTGAATCTGCTGGCATTCCGACATTTTCCGGCGGATTTCTCCGACCCACTGCCGTGGGGTGGGGAGCTTTCAATGTGGGGTTTTCAAATAACAGTGATCCTGAACCGGGAAGGTGCCGTCGGACCGACGGGAAGAAATGGCGGTGCTCAAGAGACGCAGTTGCTGACCAGAAGTACTGTGAACGGCATATGAACAGAGGCCGCCATCGTTCAAGAAAGCCTGTGGAAGGCCAAGCCGGCCACTCCCACTCCGTCGCCGGAGCCTCCAATATTACCACCGCTGCCACCACCACCACCACCATCACCACCACCTCTAAACTGATTTCTTCTTCTCCACCTTCCATGACGGCGGTACCCAGCAACGCCTCCCCCAACACCATCTCTTGTGCTGGTACTCATCACTTCAAGAACCTGAACCGCGGTGGATCTCATCCGCCTCCCTCCTCCGCCACCGCCCCTCAAATCAACAGAATGTTCATAACAAACAAAGAGAATGGCGGCGTTGGGTTGCATGATTCATCTTCCATGAACATGAAACAATTCAAACAGCTTCCATTTGCCATTAACAAACAGAACCCTTTTGAAGAATCTCCAAGAACAGAGTTTACGTCTGTCTCTTCCAATTTCCTCCTCAACCCTTCACAAAAGGCTTCATCTTTGATGACTTACAGAGCTTTCAATCCTTCAGAGGGCCTCACTACTTCTCAACCAGCAGCTGAAACCCAACATTGGCCTAAGAACCAATCCGATAGCTCATCGGTGTCGTGGTCGAACTGGAATCCCGATCTCCAATCCGATAGGACTCAGCTATCCATATCAATCCCAATGGCTACATCAGATTTCAGATCCTCAACGTCGTCTCCCGTTCACGAGAAACTCACTCTCTCGCCGTTGAGATCATCGCAGGAGTTCGACCCAATACAAATGGGATTGGGAGTGGGGAATAATGTAATGGATGAGGCAAACAACAGACTGGCGAATTGGATTCCCATCTCGTGGGAGAGCTCAATGGGTGGTCCGCTTGGAGAGGTTCTTCATAGCACGAACAACAACAGCGGGGAATCGAAGAACTCGTCGATACTAAACCTGATGACCGAAGGGTGGGACATCAGTTCGTCGCCCACCGGGGTTCTGCAGAAGACTGCGTTCGGGTCTTTCTCAAACAGCAGCACAGGGAGTAGCCCAAGAACAGATAACAACAACAAGACTCACGAAGTAGGAGGAGGAGGAGGCAGCCAATGCAGCGATCGTTTGGGGTCAACTTTTGTGAATTCTTCATCATCTTTGCCTAGTGGTTAA 1851 49.7 MDFGAVGFDGLVVGSSDISGFSSDPEMKQKWYDSASVSGFLHKQERSGSGGVAEMEDLRVSKLPKTSASSLLRSNSPFFVSDSNQNHHQMLCFSSPKAEPPRLDKTASLSAASANFVRSSAPRNAGGSYGGLNGGSMHGGGFIGVRAPFTPSQWMELEHQALIYKYITANVHVPSNLLIPIRKALESAGIPTFSGGFLRPTAVGWGAFNVGFSNNSDPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVEGQAGHSHSVAGASNITTAATTTTTITTTSKLISSSPPSMTAVPSNASPNTISCAGTHHFKNLNRGGSHPPPSSATAPQINRMFITNKENGGVGLHDSSSMNMKQFKQLPFAINKQNPFEESPRTEFTSVSSNFLLNPSQKASSLMTYRAFNPSEGLTTSQPAAETQHWPKNQSDSSSVSWSNWNPDLQSDRTQLSISIPMATSDFRSSTSSPVHEKLTLSPLRSSQEFDPIQMGLGVGNNVMDEANNRLANWIPISWESSMGGPLGEVLHSTNNNSGESKNSSILNLMTEGWDISSSPTGVLQKTAFGSFSNSSTGSSPRTDNNNKTHEVGGGGGSQCSDRLGSTFVNSSSSLPSG 616
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3686750 3688961 + Carg16381-RA Car12g00553 158169

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00553 616 MobiDBLite consensus disorder prediction 415 444 - -
Car12g00553 616 Pfam QLQ 148 182 IPR014978 GO:0005524|GO:0005634|GO:0006355
Car12g00553 616 Pfam WRC 218 260 IPR014977 -
Car12g00553 616 MobiDBLite consensus disorder prediction 288 317 - -
Car12g00553 616 ProSiteProfiles QLQ domain profile. 148 183 IPR014978 GO:0005524|GO:0005634|GO:0006355
Car12g00553 616 MobiDBLite consensus disorder prediction 288 337 - -
Car12g00553 616 MobiDBLite consensus disorder prediction 565 616 - -
Car12g00553 616 ProSiteProfiles WRC domain profile. 217 261 IPR014977 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00553 - - - csv:101202772 824.313
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car05g00106 Car12g00553 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00553 Car-Chr12:3686750 Car20g00815 Car-Chr20:5243314 5.75E-40 dispersed
Car12g00553 Car-Chr12:3686750 Car03g00811 Car-Chr3:6674282 5.91E-105 wgd
Car12g00553 Car-Chr12:3686750 Car05g00106 Car-Chr5:557111 0 wgd
Car12g00553 Car-Chr12:3686750 Car07g00554 Car-Chr7:2830189 4.99E-119 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g612 Blo01g01488 Blo12g00996 Bda01g00599 Bda03g00162 Bpe02g00463 Bpe04g00144 . . Cmo05g00128 Cmo12g00548 . . . Car12g00553 . . Cpe07g00530 Bhi04g00454 Tan02g1695 . . Hepe08g1351 . . Cla08g01639 Cam08g2143 Cec08g1730 Cco08g1850 Clacu08g1831 . Cre08g1614 Cone4ag1631 Cone7ag1319 Cone17ag0901 Cone20ag0243 . . . Cme03g02123 . Blo18g00727 . Bda01g01584 Bpe02g01773 . Bma01g00682 . . . . Cma12g00612 Cma05g00124 Car05g00106 . Cpe11g00107 . . . . . . . . . . . . . . . Lsi08g01545 Csa02g01873 Chy03g01613 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001015 3 4 5 4 4 2 5 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 2 2 3 1 81
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4424 PF08879 WRC 3.40E-21 No_clan Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car12g00553 Car_Chr12 FPKM 0.54828 1.621617 1.045925 1.739915 1.684082 0.0 1.971305 1.79403 0.0 0.0