Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00554 ATGCTGCCTTTGAGGCAGGCTCCGGCCGGAGTCGAACCGGCGACCAAGTTTTCCCTTACCACTCTTCCCTCTCTCAAATTCTCTAACCCTAATCCTTTTCGACGCTCTAAACTTATTCCCAGAAGGAATGCTGCGAAGCCGCTTATCATAGCCCTCTCAAAAGCGGAAGGAGCCGTCGATTCGACGAAACAGGCTCTTTCCAACTCTCCAAGTCTGCCTTCTTCTCCCTCCGACCAGACGGTTTTCGTCGGCGATGAGAGTGTTCCGTTGGAAGGCGTCATTCAGTTTGATAAGCCCGATAGGTCTTCTCGATGGAGAAAATGGAGTCATGTGGCTCTGCTTGCTGGTGGAGATGTATTGGCTTTGCTTTTGTTCTCCTCAATAGGAAGATTTAGCCATGGTTTCCCTGTTTTTGATTTCGAGACTTTGCGCACGGCGGATCCTTTTATTGCTGGTTGGTTTCTGAGTGCTTACTTTCTCGGAGGTTATGGAGAGGATGGGCGTGGTTTAAATGGTTATTCCAAGGCTGTTTTTGCAGCTTCTAAATCATGGGCTTTGGGAATTCCTCTTGGTCTAATAATAAGAGCTGCAACGTCTGGCCATATTCCACCATATCATTTCATAGGGGTAACGATGGGAAGCACGGCTGTCTTGCTCGTTGGATGGAGAGCGATACGATATAAAGTTTTTCCAGTCGATAACGGGAAGAAGAACGATGTATATCGTCGTGGCAACCCATTTGAGCTATTTGAGGTTCAGAAACTTCTTCACTATCAACATCCAAAATGTGCCATATGCTTATTTATGCCATTCCTTTCCATGAATGCTTCCTCGCAAACTGTTGTTGACATCATTGGTGAGAAGATGGTGACGATGGACAAACACCCTCCATTTGCTGTGTTATCTTAA 909 46.42 MLPLRQAPAGVEPATKFSLTTLPSLKFSNPNPFRRSKLIPRRNAAKPLIIALSKAEGAVDSTKQALSNSPSLPSSPSDQTVFVGDESVPLEGVIQFDKPDRSSRWRKWSHVALLAGGDVLALLLFSSIGRFSHGFPVFDFETLRTADPFIAGWFLSAYFLGGYGEDGRGLNGYSKAVFAASKSWALGIPLGLIIRAATSGHIPPYHFIGVTMGSTAVLLVGWRAIRYKVFPVDNGKKNDVYRRGNPFELFEVQKLLHYQHPKCAICLFMPFLSMNASSQTVVDIIGEKMVTMDKHPPFAVLS 302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3689881 3692328 + Carg16380-RA Car12g00554 158170

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00554 302 Pfam Protein of unknown function (DUF3054) 116 225 IPR021414 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00554 - - - csv:101212562 424.091
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car05g00105 Car12g00554 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00554 Car-Chr12:3689881 Car05g00105 Car-Chr5:554153 1.34E-153 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g610 . . . . . . . . Cmo05g00127 Cmo12g00549 . . . Car12g00554 Sed10g1155 . Cpe07g00531 Bhi04g00455 Tan02g1694 Cmetu03g2102 . Hepe08g1352 . Lcy13g2153 Cla08g01640 Cam08g2144 Cec08g1731 Cco08g1851 Clacu08g1832 . Cre08g1615 Cone4ag1632 . . . . . . Cme03g02124 . . . . . Bpe05g00047 . . . . . Cma12g00613 Cma05g00123 Car05g00105 . . . . . . . . . . . . . . . . . Lsi08g01546 Csa02g01872 Chy03g01614 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009323 0 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 3 2 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car12g00554 Car_Chr12 FPKM 18.278387 18.7637 23.141459 21.415764 12.749807 11.512714 12.697065 9.922688 11.825374 11.447569