Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00555 ATGACCATAACAATGGCTGGTTGGGATTCTATGGGATTCCCGACTCTTCTGCTGCTGCTGCTTGCTGCTATGCACCTCAAATCTGACGCCTCTCTCTGTCTCATGGGGCCTCTTTCAACATCCCAAAATCAAGGGATGGTGCCGAATTCATCACCGAAGCTCGAGGACTTTCTCGGCGGTGCAACAATGGCGGACAGGGAACATTCATTGGACCTTCAAAATCAAGATCATCACCACATTTTGATTCAAAATTCCCATCCCTACTACTCTGCTTTGGTTCCTTCCGACCCACAAATTCTTCCAATCGACGAAAACGAAATCCGTTCCCTTAGAAACTGGGTCTCTCCTCCCTACTACGCCGCCACTCCCCATAATACTCTGGAGCAGCATATTACCGGCGGTGGCGGTGGTTCTGCCTCCATTGCCGGAATGAGCTCCGGGGAACTCCAGTCATTGAGCTTATCCATGAGTCCAGGTTCTCAATCAACCTCGTTCACAGCTCCCGGCCAGATCTCTTCCACCGCCGCCGTGGAAACAAAGAAACGAGGCCCTGGGAAGCTCTGCCACAAACAACCCGTTCACCGCAAATCCATTGATACTTTTGGCCAACGAACCTCCCAATATCGCGGAGTTACAAGACATAGATGGACAGGGAGATATGAAGCTCATCTATGGGATAATAGCTGCAAGAAAGAAGGGCAAACAAGGAAAGGAAGACAAGGAGGATATGATATGGAAGAGAAGGCTGCAAGAGCTTATGATCTTGCCGCTCTCAAATATTGGGGACCCTCCACTCATATAAATTTTCCACTGGAGAATTATCAGACTGAGCTGGAAGAGATGAAGAACATGAGCCGCCAGGAATATGTTGCCCACTTGAGAAGGAAAAGCAGTGGCTTTTCGAGGGGCGCTTCGGTGTTCCGTGGAGTTACAAGACATCACCAACATGGAAGATGGCAGGCCAGGATTGGGCGAGTTGCTGGAAATAAAGATCTTTATCTTGGAACATTTAGCACGCAAGAGGAAGCAGCTGAGGCATACGACATAGCAGCAATCAAATTCCGCGGCGTAAATGCAGTCACCAACTTTGACATTTGTAAGTACGATGTCGAGAGAATCATGGCTAGTAGTACACTACTAGCAGGCGAGCTAGCTCGAAGAAACAAGGAAGTAGACACAACCGTTGCGCCAAACAACAACGGCAGGGTTGCAGTCGAGATCGAAAACAATGACACCAATTCAAATAGTACCACCGATTGGAAGACGGCATTGTATAACAATCAGCAACAACAGTCCATAGCTGCATTAGGAGGCTATCGAAACGCGTCGTTTACAATGGCATTACAAGACTTGATAGGGACGGAATCGTTAACCTCAGCGAGTCAATTTTCAAATTCATCGTCATTGGTAACAAGAGAAGGCAGCCCGGAGAAGACAAAGGTGGCAGCAGTAAATGGTGTCAGCTCGTGGTACCCATGGCCAGCAGCGATAGCCATGGCACATTTACCTGTTTTTGCAGCTTGGAACGACACTTAA 1536 48.31 MTITMAGWDSMGFPTLLLLLLAAMHLKSDASLCLMGPLSTSQNQGMVPNSSPKLEDFLGGATMADREHSLDLQNQDHHHILIQNSHPYYSALVPSDPQILPIDENEIRSLRNWVSPPYYAATPHNTLEQHITGGGGGSASIAGMSSGELQSLSLSMSPGSQSTSFTAPGQISSTAAVETKKRGPGKLCHKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQTELEEMKNMSRQEYVAHLRRKSSGFSRGASVFRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVNAVTNFDICKYDVERIMASSTLLAGELARRNKEVDTTVAPNNNGRVAVEIENNDTNSNSTTDWKTALYNNQQQQSIAALGGYRNASFTMALQDLIGTESLTSASQFSNSSSLVTREGSPEKTKVAAVNGVSSWYPWPAAIAMAHLPVFAAWNDT 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3699394 3702270 + Carg16379-RA Car12g00555 158171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00555 511 MobiDBLite consensus disorder prediction 152 177 - -
Car12g00555 511 ProSiteProfiles AP2/ERF domain profile. 207 270 IPR001471 GO:0003700|GO:0006355
Car12g00555 511 Pfam AP2 domain 305 356 IPR001471 GO:0003700|GO:0006355
Car12g00555 511 Pfam AP2 domain 207 262 IPR001471 GO:0003700|GO:0006355
Car12g00555 511 MobiDBLite consensus disorder prediction 152 191 - -
Car12g00555 511 ProSiteProfiles AP2/ERF domain profile. 306 364 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00555 Car-Chr12:3699394 Car12g00953 Car-Chr12:9641161 2.92E-115 dispersed
Car01g00029 Car-Chr1:147113 Car12g00555 Car-Chr12:3699394 3.07E-131 transposed
Car01g01376 Car-Chr1:12078855 Car12g00555 Car-Chr12:3699394 1.28E-131 wgd
Car12g00555 Car-Chr12:3699394 Car03g00809 Car-Chr3:6661442 1.38E-128 wgd
Car12g00555 Car-Chr12:3699394 Car05g00104 Car-Chr5:544015 0 wgd
Car12g00555 Car-Chr12:3699394 Car07g00553 Car-Chr7:2818030 1.76E-178 wgd
Car12g00555 Car-Chr12:3699394 Car09g00261 Car-Chr9:1428446 3.80E-26 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4425 PF00847 AP2 3.20E-10 CL0081 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00555 K09285 - csv:101212797 673.7