Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00556 ATGGCTAATTGGTGGAGAAAAGAGAGCCATAAAGGAACCCCTGTTGTTGTAAAGATGGAGAATCCCAACTGGTCAATGGTTGAACTTCAAGGCCCTTCCGATGATGACTTCATTATCGCCGCCGAGTCGCCGCCGGGTAGAATCAGAGAGAAAGGACGAGGAAAAAACGCCAAGCAACTCACTTGGGTTCTTCTTCTTAAAGCTCATAAGGCTGCCGGTTGTTTAACCTCCATTGGCTCTGCATTGGTTAATATCGGCGCTGCTGTTAAACGTCGTGTTGCTTCCGGTAAAACCGATGCCGACCTCGACAACGACAATGACAACGCCGACAGCGGCGAGAGGGAAAACCCAACTGTCAAAACCAGGTTTTATTTGTTTATTAAGATTTTCCTTTGGGTGTCGGTGGGTCTATTAGGGTTTGAAGTGGCGGCGTATTACAAGGGCTGGCATTTTAGGGCACCCCATCTTGAATTGAACTACTTTTGGGCATACCCATTTGGGGTTAAGGATGTTTTTGATTGGATTTACTCGAAATGGGTTGTGATTCGTGTGGATTATTTTGCTCCTCCTCTCCAGTTCTTGGCCAATGTTTGTATAGTGTTGTTCCTCATTCAAACTCTGGATAGGTTGATTCTTTGTTTGGGTTGTTTCTGGATCCGCTTCAAGAAAATCAAACCGGTTCCGAATGCTTCGGCGTTCGATCTTGAATCTGGAGAGACTGGTTACTTCCCTATGGTTCTTGTTCAGATCCCAATGTGCAATGAAAAAGAGGTTTATCAGCAATCAATTGCTGCTGTCTGCAACTTAGACTGGCCAAAAGATAAGTTACTGATTCAGGTTCTCGACGACTCGGATGATCCAATAACCGTATTGCTGATCCAAGAGGAGGTTCGTAAATGGCAGCAACTCGATGCCAACATCGTGTACCGACATAGGGTGATTCGAGAGGGGTATAAGGCAGGCAATCTCAAGTCTGCCATGAGTTGCAGCTATGTGAAAGACTATGAATTTGTTGCTATCTTTGATGCTGATTTTCAGCCTGCCTCTGATTTCCTTAAAAGAACACTTCCTCATTTTAAGGATAATGAGGAACTTGGACTCGTTCAAGCGCGGTGGTCGTTCGTAAACAAGGACGAGAACTTGTTAACCCGACTGCAGAACATTAACTTAGCCTTTCATTTCGAGGTGGAGCAACAGGTTAATGGAGTTTTTCTTAATTTCTTTGGATTCAATGGCACGGCTGGTGTTTGGAGGATTAAGGCTCTTGAAGAAGCCGGTGGATGGCTGGAAAGAACCACGGTTGAGGACATGGACATTGCGGTTCGTGCTCATCTTCATGGCTGGAAATTCATATTCCTCAACGATGTAGAGTGCCAATGTGAATTACCCGAATCGTATGAAGCGTATAGAAAACAACAGCACCGATGGCATTCTGGACCGATGCAATTGTTTCGTCTTTGTTTGCCTGATATCGTTCGATCAAAGATTGGCATATGGAAGAAATTCAACTTGATCTTCCTGTTCTTTCTGCTACGAAAGCTGATATTACCGTTTTATTCGTTTACACTTTTCTGCATTATTCTTCCGATGACGATGTTCGTTCCCGAAGCCGTGTTACCTGCGTGGGTCGTATGTTACATTCCAGCCACCATGTCTTTTCTCAACATTCTTCCAGCACCAAAGTTCTTCCCTTTCATTGTCCCTTACCTCCTTTTCGAGAACACAATGTCGGTAACAAAGTTCAATGCAATGGTTTCGGGACTTTTTCAACTCGGCAGTGCATACGAATGGGTCGTTACGAAGAAATCAGGTCGATCCTCCGAGGGTGATCTCGTCTCGATGGTCGGGAAAAAAGAGTTGAACACTGAAAAGAGTGCATCAGCTAACAACCTTGAGGAGATTGAGTTAATACAAAAACAGGACAAGAATTTGTCGAAGAAGAAGCATAATAGAATATACATGAAGGAACTAGCATTGGCTTTCCTTCTCCTAACAGCCTCAGCTAGAAGCCTTCTCTCAGCTCAAGGGATTCATTTCTACTTCTTGATGTTTCAAGGAATATCCTTTCTCCTCGTCGGTCTCGACTTGATCGGCGAGCAGGTTGTTTGA 2109 44.43 MANWWRKESHKGTPVVVKMENPNWSMVELQGPSDDDFIIAAESPPGRIREKGRGKNAKQLTWVLLLKAHKAAGCLTSIGSALVNIGAAVKRRVASGKTDADLDNDNDNADSGERENPTVKTRFYLFIKIFLWVSVGLLGFEVAAYYKGWHFRAPHLELNYFWAYPFGVKDVFDWIYSKWVVIRVDYFAPPLQFLANVCIVLFLIQTLDRLILCLGCFWIRFKKIKPVPNASAFDLESGETGYFPMVLVQIPMCNEKEVYQQSIAAVCNLDWPKDKLLIQVLDDSDDPITVLLIQEEVRKWQQLDANIVYRHRVIREGYKAGNLKSAMSCSYVKDYEFVAIFDADFQPASDFLKRTLPHFKDNEELGLVQARWSFVNKDENLLTRLQNINLAFHFEVEQQVNGVFLNFFGFNGTAGVWRIKALEEAGGWLERTTVEDMDIAVRAHLHGWKFIFLNDVECQCELPESYEAYRKQQHRWHSGPMQLFRLCLPDIVRSKIGIWKKFNLIFLFFLLRKLILPFYSFTLFCIILPMTMFVPEAVLPAWVVCYIPATMSFLNILPAPKFFPFIVPYLLFENTMSVTKFNAMVSGLFQLGSAYEWVVTKKSGRSSEGDLVSMVGKKELNTEKSASANNLEEIELIQKQDKNLSKKKHNRIYMKELALAFLLLTASARSLLSAQGIHFYFLMFQGISFLLVGLDLIGEQVV 702
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3712275 3714709 - Carg16378-RA Car12g00556 158172

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00556 702 Pfam Glycosyl transferase family group 2 338 543 IPR001173 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00556 - - - csv:101203245 1266.52
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car09g00263 Car12g00556 CCT
Car01g01374 Car12g00556 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00556 Car-Chr12:3712275 Car15g00304 Car-Chr15:1646301 0 dispersed
Car01g01374 Car-Chr1:12066696 Car12g00556 Car-Chr12:3712275 0 wgd
Car12g00556 Car-Chr12:3712275 Car09g00263 Car-Chr9:1438177 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g605 Blo01g01484 Blo12g00794 Bda01g00601 Bda03g00159 Bpe02g00467 Bpe04g00141 . Bma01g02228 . Cmo12g00551 Cma01g01758 Cma09g00311 Car01g01374 Car12g00556 Sed10g1150 Cpe06g00220 Cpe07g00533 Bhi04g00461 Tan02g1687 Cmetu03g1896 . Hepe08g1357 . Lcy13g2156 Cla08g01643 Cam08g2147 Cec08g1735 Cco08g1854 Clacu08g1835 . Cre08g1618 Cone4ag1635 Cone7ag1317 Cone17ag0903 Cone20ag0246 Lsi04g01454 Csa04g02506 . Cme03g02127 . . . . . . . . Sed11g1870 Cmo01g01821 Cmo09g00311 Cma12g00615 . . Car09g00263 . Cpe02g00240 Bhi09g03190 Tan01g4659 Cmetu07g2267 . Hepe01g1852 Mch11g0387 . . . . . . . . Lsi08g01551 Csa02g01868 Chy07g00213 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car02g00285 CST 177 337 REM Transcription Factor Family AT1G49480 72.0 7.2e-58 221.1
Car20g00761 CST 176 338 REM Transcription Factor Family AT1G49480 70.6 4.7e-57 218.4
Car01g01200 . 1 695 REM Transcription Factor Family AT2G24630 77.6 0.0e+00 1090.5
Car09g00462 . 1 695 REM Transcription Factor Family AT2G24630 76.5 0.0e+00 1080.5
Car04g02628 CST 4 661 REM Transcription Factor Family AT2G24630 69.6 2.9e-267 918.3
Car15g00304 CST 6 665 REM Transcription Factor Family AT2G24630 68.6 1.9e-266 915.6
Car01g01374 CCT,CST 1 706 REM Transcription Factor Family AT2G24630 64.5 3.9e-264 907.9
Car09g00263 CCT 1 706 REM Transcription Factor Family AT2G24630 64.6 3.9e-264 907.9
Car12g00556 CCT,CST 5 700 REM Transcription Factor Family AT2G24630 65.3 4.2e-258 887.9
Car08g00219 . 5 693 REM Transcription Factor Family AT2G24630 62.2 7.6e-244 840.5
Car17g01200 . 5 694 REM Transcription Factor Family AT2G24630 61.7 1.3e-243 839.7
Car01g01200 . 1 695 REM Transcription Factor Family AT2G24630 77.6 0.0e+00 1090.5
Car09g00462 . 1 695 REM Transcription Factor Family AT2G24630 76.5 0.0e+00 1080.5
Car04g02628 CST 4 661 REM Transcription Factor Family AT2G24630 69.6 2.9e-267 918.3
Car15g00304 CST 6 665 REM Transcription Factor Family AT2G24630 68.6 1.9e-266 915.6
Car01g01374 CCT,CST 1 706 REM Transcription Factor Family AT2G24630 64.5 3.9e-264 907.9
Car09g00263 CCT 1 706 REM Transcription Factor Family AT2G24630 64.6 3.9e-264 907.9
Car12g00556 CCT,CST 5 700 REM Transcription Factor Family AT2G24630 65.3 4.2e-258 887.9
Car08g00219 . 5 693 REM Transcription Factor Family AT2G24630 62.2 7.6e-244 840.5
Car17g01200 . 5 694 REM Transcription Factor Family AT2G24630 61.7 1.3e-243 839.7
Car01g01200 . 1 695 REM Transcription Factor Family AT2G24630 77.6 0.0e+00 1090.5
Car09g00462 . 1 695 REM Transcription Factor Family AT2G24630 76.5 0.0e+00 1080.5
Car04g02628 CST 4 661 REM Transcription Factor Family AT2G24630 69.6 2.9e-267 918.3
Car15g00304 CST 6 665 REM Transcription Factor Family AT2G24630 68.6 1.9e-266 915.6
Car01g01374 CCT,CST 1 706 REM Transcription Factor Family AT2G24630 64.5 3.9e-264 907.9
Car09g00263 CCT 1 706 REM Transcription Factor Family AT2G24630 64.6 3.9e-264 907.9
Car12g00556 CCT,CST 5 700 REM Transcription Factor Family AT2G24630 65.3 4.2e-258 887.9
Car08g00219 . 5 693 REM Transcription Factor Family AT2G24630 62.2 7.6e-244 840.5
Car17g01200 . 5 694 REM Transcription Factor Family AT2G24630 61.7 1.3e-243 839.7
Car02g00285 CST 177 337 REM Transcription Factor Family AT1G49480 72.0 7.2e-58 221.1
Car20g00761 CST 176 338 REM Transcription Factor Family AT1G49480 70.6 4.7e-57 218.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002112 2 2 2 2 2 2 3 2 2 2 2 2 3 2 2 3 2 4 2 2 2 2 2 2 2 2 2 3 2 1 65
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car12g00556 Car_Chr12 FPKM 16.706572 16.368288 21.700539 21.412121 14.562756 13.288088 13.099656 10.208711 10.646925 9.907181