Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00561 ATGATCCACAGAGCTCTCTTCCCCCACTCGTTACTTTCCTCATCTTCTTGGCCTCGTTCTTGCCTTTCTTCATCTTTCTCAAAGCTTGGAGGCGGCTGCCATGGCGATGCGTCTAGGGCTGTATCTTCCATGCCGGAGCCTTGCCGGTCATCGCCGTTCAGCGATGATGAGAGCCGTGATATTGATTGGGATAGCCTTGGATTTGGGCTGTTGCCAACAGATTACATGTATGTTATGAAATGCTCTGAAGATGAGAATTTCGAACGAGGTCAGCTGAGTCGTTATGGGAACATTGAGTTAAGCCCTGCTGCTGGGGTTCTAAATTATGGCCAGGGATTGTTTGAAGGTCTGAAAGCATATAGGAAAGAAGATGGAGGCCTTCTTCTCTTTCGTCCGCACCAAAATGCTCTTCGTATGAGGACCGGTGCCGAACGAATGTGTATGCCGTCGCCCTCCGTCGAACAATTTGTTGATGCTGTGAAGCAAACTGCCATTGCTAACCGGCGTTGGGTCCCTCCGTCCGGGAAAGGATCATTATACTTGAGGCCTTTGCTCGTCGGGACTGGTCCCGTTCTCGGCTTGGCTCCGGCGCCTGAATATACTTTTCTTGTTTATGCTTCCCCTGTTCGCAACTATTTCAAGGAAGATTCAGGAGCCTTGAACCTATACGTCGAGACCGAGTTCGTTCGTGCATCTCGTGGTGGAACTGGAGGTGTGAAAACCATCTCAAATTATGCTCCAGCTTTAAAAGCTATCACCAGAGCCAAAAGTAGAGGCTTTTCTGATGTCTTATATCTTGATTCAGTGAATAAGAGAACTCTGGAGGAAGTTTCTTCTTGCAACATTTTTCTTGTCAAGGGAAATGTTATATCGACTCCTGCTACAAGTGGAACGATTCTTCCAGGAGTAACCCGGAAAAGCGTCATCGATATAGCCCGTAATCGCGGTTACGAGGTTGAGGAACGGGCTATCGACATGGATGAACTGTTCGACGCTCGTGAAGTTTTCTGCACGGGAACTGCTGTCGGTGTGGCCCCTGTTGGGAGCATCACTTGTATGGATAAAAGGATTGAGTACCAAACAGGTGCTGGGACAACATGTCAGGAACTATACTCAACTCTTGTTGGGATTCAAACTGGAACCATCGAGGATAAGAATGGGTGGACTGTTGAGATCTCTTAA 1182 48.05 MIHRALFPHSLLSSSSWPRSCLSSSFSKLGGGCHGDASRAVSSMPEPCRSSPFSDDESRDIDWDSLGFGLLPTDYMYVMKCSEDENFERGQLSRYGNIELSPAAGVLNYGQGLFEGLKAYRKEDGGLLLFRPHQNALRMRTGAERMCMPSPSVEQFVDAVKQTAIANRRWVPPSGKGSLYLRPLLVGTGPVLGLAPAPEYTFLVYASPVRNYFKEDSGALNLYVETEFVRASRGGTGGVKTISNYAPALKAITRAKSRGFSDVLYLDSVNKRTLEEVSSCNIFLVKGNVISTPATSGTILPGVTRKSVIDIARNRGYEVEERAIDMDELFDAREVFCTGTAVGVAPVGSITCMDKRIEYQTGAGTTCQELYSTLVGIQTGTIEDKNGWTVEIS 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3744797 3747924 - Carg16373-RA Car12g00561 158177

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00561 393 Pfam Amino-transferase class IV 112 350 IPR001544 GO:0003824
Car12g00561 393 MobiDBLite consensus disorder prediction 38 57 - -
Car12g00561 393 ProSitePatterns Aminotransferases class-IV signature. 276 305 IPR018300 GO:0003824
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00561 K00826 E2.6.1.42, ilvE; branched-chain amino acid aminotransferase [EC:2.6.1.42] - csv:101214004 650.973
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00561 Car-Chr12:3744797 Car03g00802 Car-Chr3:6609380 2.21E-174 wgd
Car12g00561 Car-Chr12:3744797 Car05g00099 Car-Chr5:509364 0 wgd
Car12g00561 Car-Chr12:3744797 Car07g00545 Car-Chr7:2770553 1.48E-177 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g593 . . . . . . . . Cmo05g00119 . . . . Car12g00561 . . . Bhi04g00472 . . . . . . . . . . . . . Cone6ag1482 . Cone8ag0180 Cone12ag0187 . . . . . . . . . . . . . . . . Cma05g00115 . . Cpe11g00101 . . . . . . . . . . . . . . . . Csa02g01862 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007941 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 2 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car12g00561 Car_Chr12 FPKM 8.12253 10.775889 14.779329 13.984045 10.419012 9.795523 11.26181 3.461342 3.8364 4.242197