Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00563 ATGGATCCAAATTCTACTGATTCCCCGACATCACCTACTGTCAAGTCCTTGGAAACTAAACCACCAGAAGCACAGCCTCAGGCTTCTGCTACCATTGGAATGAATAATGTAGCCCCTGATTCACCATCTAAGCCATCTCCCAGTGGCATAACTTCATGGACCAAAAGCTTGAGAATTACTCAATCACAGTCAGCTTCACAAGATGATGGCACGTCTGAGAATGCTGGGAAGTCAGCATTTGCACGTTTTACTAGTGGTTTAGGTTTGAATTTGTCTCCGAAATCCGCTGCACCTAATGATTCCTCAGATGGAACCTCTAAACCTGCCCAACCTGGTTTTGTGGGATCAATTACAAGAGGGTTGGTTGATTCTTCTAAGAGTGCTGTAAAGGCTGTACAAGTTAAAGCTCGTCACGTTGTCTCCCAAAATAAGCGACGATACCAGGAAGGTGGATTTGATTTGGATATGACTTATATTACTGAAAACATCATTGCCATGGGTTTTCCTGCTGGTGACATGAGCTCAGGGTTTTTCGGATATGTTGAGGGTTTCTACAGGAATCATATGGAAGAAGTCATCAAGTTCTTCGAAACACATCACAAGGGAAAATACAAAGTATATAATCTTTGTTCCGAGAGGCTATATGATGCTTCGTTATTTGAAGGAAAGGTGGCTTGTTTTCCTTTTGATGACCATAACTGTCCCCCAGTTCAACTCATAATATCATTTTGCCGAAGTGCTTATTCATGGCTGAAGGATGATATTGAAAATGTAGTGGTTGTGCATTGCAAGGCAGGAATGGCCAGGACCGGCTTGATGATTTCCAGTCTTCTTCTGTTTCTGAAGTTCTTTCCCACTGCTGACGAATCCATCGAATACTACAACCAGAGAAGGTGTTTCGATGGCAAGGGCCTGGTTTTACCAAGTCAGATTAGGTACGTCAAGTATTTCGAGCGTATTTTAACACACTTCAATGGAGAAAATCCTCCCAACCGCAGGTGCGTGCTTAGAGGGTTTCGTCTCCACCGATGCCCATATTGGATCAGGCCTTCCATTACGGTATCTGACCATAATGGTGTTCTGTTCTCCACTAAAATGCATCCAAGAATCAAGAGTCTCTCGCCAGAAGATTTTTGGTTTACTGCACCAAAGAAGGGGGTAATGGTTTTCGCCTTGCCAGGGGAGCCTGGTCTAGCTGAGTTGTGTGGGGACTTCAAGGTTCATTTTCATGACCGCCAAGGAGACTTTTATTGTTGGCTAAACACAACCATGACTGAAGATCGGAAAATGCTCTACACAAATGATCTTGATGGGTTTGATAAGAGGACACTGCCTTCCCCTGGATTTCAGGTGGAGGTTGTTCTAGTAGATACCTCGCCGAACAAGGACAATACTACCAAGAAGTTGGATGAAGGCTCAGGGTCAAAACCTTCTACAGTTCATGAGAGTGAAGTTTCTGAGAACCAAAACAGAAAACCAGGAACTAACGATAAAGATGATGTATTTTCTGATAGTGAATCAGAAGGTGGTTCTTCAAAGAGAAAGGAGGCAACTGCAGGATCAGCTGTCAAGACGACATCCAAATCTCAAACGACTGCGACTTCATCAGACGACGTTGCAAGTTCATCACATGCAACGAAGCAAGCTTCCCTGAGAGATGGTAGAGCGAAACAGACTGCTCTCACAGAAGTTCCAAACTCGGAAAGTGAATTCAAGGCAATGGCTGCTGATGCTTCTGTTTTCACATTCGGCGACGACGACGACGACGACGAGATTGAGTAA 1782 44.16 MDPNSTDSPTSPTVKSLETKPPEAQPQASATIGMNNVAPDSPSKPSPSGITSWTKSLRITQSQSASQDDGTSENAGKSAFARFTSGLGLNLSPKSAAPNDSSDGTSKPAQPGFVGSITRGLVDSSKSAVKAVQVKARHVVSQNKRRYQEGGFDLDMTYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFETHHKGKYKVYNLCSERLYDASLFEGKVACFPFDDHNCPPVQLIISFCRSAYSWLKDDIENVVVVHCKAGMARTGLMISSLLLFLKFFPTADESIEYYNQRRCFDGKGLVLPSQIRYVKYFERILTHFNGENPPNRRCVLRGFRLHRCPYWIRPSITVSDHNGVLFSTKMHPRIKSLSPEDFWFTAPKKGVMVFALPGEPGLAELCGDFKVHFHDRQGDFYCWLNTTMTEDRKMLYTNDLDGFDKRTLPSPGFQVEVVLVDTSPNKDNTTKKLDEGSGSKPSTVHESEVSENQNRKPGTNDKDDVFSDSESEGGSSKRKEATAGSAVKTTSKSQTTATSSDDVASSSHATKQASLRDGRAKQTALTEVPNSESEFKAMAADASVFTFGDDDDDDEIE 593
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3766505 3771288 + Carg16371-RA Car12g00563 158179

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00563 593 MobiDBLite consensus disorder prediction 90 112 - -
Car12g00563 593 MobiDBLite consensus disorder prediction 463 477 - -
Car12g00563 593 MobiDBLite consensus disorder prediction 518 566 - -
Car12g00563 593 ProSiteProfiles C2 tensin-type domain profile. 331 458 IPR014020 -
Car12g00563 593 ProSitePatterns Tyrosine specific protein phosphatases active site. 261 271 IPR016130 GO:0016311|GO:0016791
Car12g00563 593 MobiDBLite consensus disorder prediction 485 513 - -
Car12g00563 593 ProSiteProfiles Phosphatase tensin-type domain profile. 145 324 IPR029023 -
Car12g00563 593 MobiDBLite consensus disorder prediction 90 113 - -
Car12g00563 593 MobiDBLite consensus disorder prediction 1 76 - -
Car12g00563 593 MobiDBLite consensus disorder prediction 454 570 - -
Car12g00563 593 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 238 298 IPR000387 GO:0016311|GO:0016791
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00563 K01110 PTEN; phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN [EC:3.1.3.16 3.1.3.48 3.1.3.67] - csv:101222304 1028.08
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g01110 Car-Chr11:8814536 Car12g00563 Car-Chr12:3766505 0 dispersed
Car12g00563 Car-Chr12:3766505 Car14g00516 Car-Chr14:2830902 1.12E-41 dispersed
Car12g00563 Car-Chr12:3766505 Car09g00362 Car-Chr9:1972665 1.77E-07 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car11g01110 . 6 612 Protein tyrosine phosphatase (PTP) family AT3G50110 56.4 4.9e-181 631.7
Car07g00682 . 33 650 Protein tyrosine phosphatase (PTP) family AT3G50110 55.5 4.5e-174 608.6
Car12g00563 . 42 467 Protein tyrosine phosphatase (PTP) family AT3G50110 68.1 2.9e-173 605.9
Car11g00965 . 1 415 Protein tyrosine phosphatase (PTP) family AT5G39400 65.1 7.2e-157 550.8
Car14g00516 . 1 413 Protein tyrosine phosphatase (PTP) family AT5G39400 61.7 6.8e-147 517.7
Car15g00447 . 1 855 Protein tyrosine phosphatase (PTP) family AT3G10550 69.2 0.0e+00 1174.8
Car15g00447 . 1 855 Protein tyrosine phosphatase (PTP) family AT5G04540 65.4 0.0e+00 1109.0
Car10g00436 . 1 1218 Protein tyrosine phosphatase (PTP) family AT5G58160 52.6 0.0e+00 1087.4
Car02g00851 . 1 1234 Protein tyrosine phosphatase (PTP) family AT5G58160 55.3 0.0e+00 1085.9
Car09g00362 CCT 1 1316 Protein tyrosine phosphatase (PTP) family AT5G58160 51.4 6.8e-299 1024.2
Car01g01277 CCT 1 1397 Protein tyrosine phosphatase (PTP) family AT5G58160 51.1 9.2e-296 1013.8
Car12g00910 . 80 370 Protein tyrosine phosphatase (PTP) family AT1G71860 65.5 4.5e-112 401.7
Car10g00014 . 54 958 Protein tyrosine phosphatase (PTP) family AT5G23720 64.7 0.0e+00 1088.6
Car11g01624 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 78.7 1.4e-72 269.6
Car19g00829 . 1 175 Protein tyrosine phosphatase (PTP) family AT2G04550 71.3 1.1e-66 250.0
Car04g01476 . 96 394 Protein tyrosine phosphatase (PTP) family AT3G52180 66.9 3.4e-113 405.2
Car18g00844 . 183 463 Protein tyrosine phosphatase (PTP) family AT3G52180 67.6 9.2e-111 397.1
Car04g01004 . 54 269 Protein tyrosine phosphatase (PTP) family AT3G10940 73.0 8.9e-98 354.0
Car11g01374 . 143 504 Protein tyrosine phosphatase (PTP) family AT3G01510 70.7 6.4e-159 557.8
Car20g00205 CCT,CST 43 230 Protein tyrosine phosphatase (PTP) family AT2G32960 59.6 1.0e-68 257.3
Car11g01620 CCT 45 211 Protein tyrosine phosphatase (PTP) family AT2G32960 62.9 2.3e-68 256.1
Car19g00825 . 45 206 Protein tyrosine phosphatase (PTP) family AT2G32960 63.5 2.5e-67 252.7
Car10g00750 . 78 235 Protein tyrosine phosphatase (PTP) family AT2G32960 50.5 1.0e-52 204.1
Car05g00972 . 1 333 Protein tyrosine phosphatase (PTP) family AT2G35680 55.8 2.3e-100 362.8
Car16g01057 . 1 333 Protein tyrosine phosphatase (PTP) family AT2G35680 53.5 1.3e-95 347.1
Car12g01250 CST 17 263 Protein tyrosine phosphatase (PTP) family AT2G35680 54.9 1.1e-78 290.8
Car05g01293 CST 22 240 Protein tyrosine phosphatase (PTP) family AT2G35680 58.7 1.1e-75 280.8
Car16g01057 . 37 212 Protein tyrosine phosphatase (PTP) family AT5G56610 52.3 1.7e-44 176.4
Car05g00972 . 37 209 Protein tyrosine phosphatase (PTP) family AT5G56610 50.3 4.2e-43 171.8
Car20g00205 CCT,CST 40 230 Protein tyrosine phosphatase (PTP) family AT4G03960 68.6 2.4e-73 272.3
Car11g01620 CCT 42 211 Protein tyrosine phosphatase (PTP) family AT4G03960 72.4 5.9e-72 267.7
Car19g00825 . 42 206 Protein tyrosine phosphatase (PTP) family AT4G03960 73.9 3.2e-70 261.9
Car02g00052 CCT,CST 49 214 Protein tyrosine phosphatase (PTP) family AT4G03960 64.4 1.9e-62 236.1
Car11g00841 . 5 175 Protein tyrosine phosphatase (PTP) family AT4G03960 56.7 3.8e-55 211.8
Car10g00750 . 80 235 Protein tyrosine phosphatase (PTP) family AT4G03960 59.6 3.2e-54 208.8
Car11g00841 . 1 202 Protein tyrosine phosphatase (PTP) family AT3G02800 70.0 1.0e-79 293.5
Car10g00750 . 66 261 Protein tyrosine phosphatase (PTP) family AT3G02800 68.4 8.1e-77 283.9
Car19g00825 . 40 200 Protein tyrosine phosphatase (PTP) family AT3G02800 58.4 2.5e-54 209.1
Car11g01620 CCT 40 200 Protein tyrosine phosphatase (PTP) family AT3G02800 56.5 3.7e-53 205.3
Car20g00205 CCT,CST 37 219 Protein tyrosine phosphatase (PTP) family AT3G02800 54.6 9.1e-52 200.7
Car02g00052 CCT,CST 43 203 Protein tyrosine phosphatase (PTP) family AT3G02800 52.0 4.5e-43 171.8
Car04g01109 . 1 186 Protein tyrosine phosphatase (PTP) family AT3G55270 65.3 6.3e-61 233.0
Car04g00215 . 19 206 Protein tyrosine phosphatase (PTP) family AT3G55270 63.0 3.8e-58 223.8
Car11g00965 . 1 415 Protein tyrosine phosphatase (PTP) family AT5G39400 65.1 7.2e-157 550.8
Car14g00516 . 1 413 Protein tyrosine phosphatase (PTP) family AT5G39400 61.7 6.8e-147 517.7
Car11g01110 . 8 612 Protein tyrosine phosphatase (PTP) family AT3G19420 63.7 5.2e-220 761.1
Car12g00563 . 40 480 Protein tyrosine phosphatase (PTP) family AT3G19420 74.6 1.9e-201 699.5
Car07g00682 . 31 650 Protein tyrosine phosphatase (PTP) family AT3G19420 57.6 1.1e-188 657.1
Car11g01110 . 6 612 Protein tyrosine phosphatase (PTP) family AT3G50110 56.4 4.9e-181 631.7
Car07g00682 . 33 650 Protein tyrosine phosphatase (PTP) family AT3G50110 55.5 4.5e-174 608.6
Car12g00563 . 42 467 Protein tyrosine phosphatase (PTP) family AT3G50110 68.1 2.9e-173 605.9
Car10g00436 . 1 1218 Protein tyrosine phosphatase (PTP) family AT5G58160 52.6 0.0e+00 1087.4
Car02g00851 . 1 1234 Protein tyrosine phosphatase (PTP) family AT5G58160 55.3 0.0e+00 1085.9
Car09g00362 CCT 1 1316 Protein tyrosine phosphatase (PTP) family AT5G58160 51.4 6.8e-299 1024.2
Car01g01277 CCT 1 1397 Protein tyrosine phosphatase (PTP) family AT5G58160 51.1 9.2e-296 1013.8
Car15g00447 . 1 855 Protein tyrosine phosphatase (PTP) family AT3G10550 69.2 0.0e+00 1174.8
Car15g00447 . 1 855 Protein tyrosine phosphatase (PTP) family AT5G04540 65.4 0.0e+00 1109.0
Car02g01126 . 21 247 Protein tyrosine phosphatase (PTP) family AT3G44620 57.1 3.9e-71 265.4
Car16g01088 . 22 339 Protein tyrosine phosphatase (PTP) family AT2G35320 59.1 1.8e-107 386.3
Car07g01025 CST 2 408 Protein tyrosine phosphatase (PTP) family AT3G09100 71.4 1.8e-173 606.7
Car03g00328 CST 1 357 Protein tyrosine phosphatase (PTP) family AT3G09100 70.6 8.7e-152 534.6
Car03g00329 . 1 231 Protein tyrosine phosphatase (PTP) family AT3G09100 60.8 5.6e-74 276.2
Car07g01025 CST 2 408 Protein tyrosine phosphatase (PTP) family AT5G01290 67.8 3.8e-160 562.4
Car03g00328 CST 1 357 Protein tyrosine phosphatase (PTP) family AT5G01290 67.9 6.3e-139 491.9
Car03g00329 . 1 231 Protein tyrosine phosphatase (PTP) family AT5G01290 59.1 5.3e-69 259.6
Car07g01025 CST 2 408 Protein tyrosine phosphatase (PTP) family AT5G28210 52.7 3.9e-114 409.5
Car03g00328 CST 1 358 Protein tyrosine phosphatase (PTP) family AT5G28210 55.4 2.0e-102 370.5
Car03g00329 . 82 231 Protein tyrosine phosphatase (PTP) family AT5G28210 59.2 7.3e-44 176.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001006 4 2 3 3 2 2 3 2 2 2 2 2 3 2 2 3 2 4 3 2 2 2 2 2 2 2 2 11 6 2 83
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car12g00563 Car_Chr12 FPKM 0.776423 0.801574 0.0 0.0 0.0 0.213891 0.0 0.283526 0.0 0.259182