Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00563 ATGGATCCAAATTCTACTGATTCCCCGACATCACCTACTGTCAAGTCCTTGGAAACTAAACCACCAGAAGCACAGCCTCAGGCTTCTGCTACCATTGGAATGAATAATGTAGCCCCTGATTCACCATCTAAGCCATCTCCCAGTGGCATAACTTCATGGACCAAAAGCTTGAGAATTACTCAATCACAGTCAGCTTCACAAGATGATGGCACGTCTGAGAATGCTGGGAAGTCAGCATTTGCACGTTTTACTAGTGGTTTAGGTTTGAATTTGTCTCCGAAATCCGCTGCACCTAATGATTCCTCAGATGGAACCTCTAAACCTGCCCAACCTGGTTTTGTGGGATCAATTACAAGAGGGTTGGTTGATTCTTCTAAGAGTGCTGTAAAGGCTGTACAAGTTAAAGCTCGTCACGTTGTCTCCCAAAATAAGCGACGATACCAGGAAGGTGGATTTGATTTGGATATGACTTATATTACTGAAAACATCATTGCCATGGGTTTTCCTGCTGGTGACATGAGCTCAGGGTTTTTCGGATATGTTGAGGGTTTCTACAGGAATCATATGGAAGAAGTCATCAAGTTCTTCGAAACACATCACAAGGGAAAATACAAAGTATATAATCTTTGTTCCGAGAGGCTATATGATGCTTCGTTATTTGAAGGAAAGGTGGCTTGTTTTCCTTTTGATGACCATAACTGTCCCCCAGTTCAACTCATAATATCATTTTGCCGAAGTGCTTATTCATGGCTGAAGGATGATATTGAAAATGTAGTGGTTGTGCATTGCAAGGCAGGAATGGCCAGGACCGGCTTGATGATTTCCAGTCTTCTTCTGTTTCTGAAGTTCTTTCCCACTGCTGACGAATCCATCGAATACTACAACCAGAGAAGGTGTTTCGATGGCAAGGGCCTGGTTTTACCAAGTCAGATTAGGTACGTCAAGTATTTCGAGCGTATTTTAACACACTTCAATGGAGAAAATCCTCCCAACCGCAGGTGCGTGCTTAGAGGGTTTCGTCTCCACCGATGCCCATATTGGATCAGGCCTTCCATTACGGTATCTGACCATAATGGTGTTCTGTTCTCCACTAAAATGCATCCAAGAATCAAGAGTCTCTCGCCAGAAGATTTTTGGTTTACTGCACCAAAGAAGGGGGTAATGGTTTTCGCCTTGCCAGGGGAGCCTGGTCTAGCTGAGTTGTGTGGGGACTTCAAGGTTCATTTTCATGACCGCCAAGGAGACTTTTATTGTTGGCTAAACACAACCATGACTGAAGATCGGAAAATGCTCTACACAAATGATCTTGATGGGTTTGATAAGAGGACACTGCCTTCCCCTGGATTTCAGGTGGAGGTTGTTCTAGTAGATACCTCGCCGAACAAGGACAATACTACCAAGAAGTTGGATGAAGGCTCAGGGTCAAAACCTTCTACAGTTCATGAGAGTGAAGTTTCTGAGAACCAAAACAGAAAACCAGGAACTAACGATAAAGATGATGTATTTTCTGATAGTGAATCAGAAGGTGGTTCTTCAAAGAGAAAGGAGGCAACTGCAGGATCAGCTGTCAAGACGACATCCAAATCTCAAACGACTGCGACTTCATCAGACGACGTTGCAAGTTCATCACATGCAACGAAGCAAGCTTCCCTGAGAGATGGTAGAGCGAAACAGACTGCTCTCACAGAAGTTCCAAACTCGGAAAGTGAATTCAAGGCAATGGCTGCTGATGCTTCTGTTTTCACATTCGGCGACGACGACGACGACGACGAGATTGAGTAA 1782 44.16 MDPNSTDSPTSPTVKSLETKPPEAQPQASATIGMNNVAPDSPSKPSPSGITSWTKSLRITQSQSASQDDGTSENAGKSAFARFTSGLGLNLSPKSAAPNDSSDGTSKPAQPGFVGSITRGLVDSSKSAVKAVQVKARHVVSQNKRRYQEGGFDLDMTYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFETHHKGKYKVYNLCSERLYDASLFEGKVACFPFDDHNCPPVQLIISFCRSAYSWLKDDIENVVVVHCKAGMARTGLMISSLLLFLKFFPTADESIEYYNQRRCFDGKGLVLPSQIRYVKYFERILTHFNGENPPNRRCVLRGFRLHRCPYWIRPSITVSDHNGVLFSTKMHPRIKSLSPEDFWFTAPKKGVMVFALPGEPGLAELCGDFKVHFHDRQGDFYCWLNTTMTEDRKMLYTNDLDGFDKRTLPSPGFQVEVVLVDTSPNKDNTTKKLDEGSGSKPSTVHESEVSENQNRKPGTNDKDDVFSDSESEGGSSKRKEATAGSAVKTTSKSQTTATSSDDVASSSHATKQASLRDGRAKQTALTEVPNSESEFKAMAADASVFTFGDDDDDDEIE 593
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3766505 3771288 + Carg16371-RA Car12g00563 158179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00563 593 MobiDBLite consensus disorder prediction 90 112 - -
Car12g00563 593 MobiDBLite consensus disorder prediction 463 477 - -
Car12g00563 593 MobiDBLite consensus disorder prediction 518 566 - -
Car12g00563 593 ProSiteProfiles C2 tensin-type domain profile. 331 458 IPR014020 -
Car12g00563 593 ProSitePatterns Tyrosine specific protein phosphatases active site. 261 271 IPR016130 GO:0016311|GO:0016791
Car12g00563 593 MobiDBLite consensus disorder prediction 485 513 - -
Car12g00563 593 ProSiteProfiles Phosphatase tensin-type domain profile. 145 324 IPR029023 -
Car12g00563 593 MobiDBLite consensus disorder prediction 90 113 - -
Car12g00563 593 MobiDBLite consensus disorder prediction 1 76 - -
Car12g00563 593 MobiDBLite consensus disorder prediction 454 570 - -
Car12g00563 593 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 238 298 IPR000387 GO:0016311|GO:0016791
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g01110 Car-Chr11:8814536 Car12g00563 Car-Chr12:3766505 0 dispersed
Car12g00563 Car-Chr12:3766505 Car14g00516 Car-Chr14:2830902 1.12E-41 dispersed
Car12g00563 Car-Chr12:3766505 Car09g00362 Car-Chr9:1972665 1.77E-07 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00563 K01110 - csv:101222304 1028.08