Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00568 ATGGAAGATCAGTACAACCCTAATTTTCATTATCATCATCATCAAGAACAGCAACAACAAGTTCATGATTTTCAAATAAGTAGCGGTGGGAGTAAGGATACTGATATCATGAAGGCCAAAATCATCTCCCACTCTCAATTCTCTAATCTCCTCCAAGCTTTCTTGGATTGCAAAAAGGTGGGAGCTCCGGCGGAGGTGGCGGCGGAACTTGGGTCGGTAGGGGAGGAGTTTGAGGAGCGGCGGCGGTGTTCAATGGCGGCGAGTGGGGGTTGTAGTGATCCAGAACTTGATCAGTTCATGGAAGGTTACTATATGATGTTGGTGAAGTATAGAGAGGAGCTGACGAAGCCTATTCAAGAAGCTGCTGATTTCATGGAGAGAGTTGAATCTCAGCTCAATACTCTCTGTAATGGCTCCTTCCAAATCTTAGCTTCTGATGCAGCGACAGAAAATCGCGACGGAATGGGATCATCGGAGGAGGAGCAAGAGAAGGGCGGGGAAGGCGGAAGAGATGCAACGGAACAGATCGACCCACGAGCAGACGAGCGAGAGCTAAAGAATCACTTACTAAAGAAGTACAGTGGGTATCTGAGCACTCTAAAGCAAGAGCTTTCAAAGAAGAAGAAGAAAGGAAAGCTCCCAAAAGACGCAAGGCAGGAGCTGCTGAGATGGTGGGAAGTGCACAGCAAATGGCCATACCCATCGGAGGCAGAGAAGTTGGCGCTAGCGGAATCAACTGGGTTGGATCAGAAACAGATAAATAATTGGTTCATAAACCAGAGGAAAAGGCATTGGAAGCCGTCTGAGGATGTACAGTTGATGGGTATGGAGGGGTTTTACCATCCCAACACTGCTGCTGCTGCTGCTGCTTTTTACTTCGATGGGCATTACATGGGCGATGCCCATTACCGTTTGGGTCCATGA 924 48.05 MEDQYNPNFHYHHHQEQQQQVHDFQISSGGSKDTDIMKAKIISHSQFSNLLQAFLDCKKVGAPAEVAAELGSVGEEFEERRRCSMAASGGCSDPELDQFMEGYYMMLVKYREELTKPIQEAADFMERVESQLNTLCNGSFQILASDAATENRDGMGSSEEEQEKGGEGGRDATEQIDPRADERELKNHLLKKYSGYLSTLKQELSKKKKKGKLPKDARQELLRWWEVHSKWPYPSEAEKLALAESTGLDQKQINNWFINQRKRHWKPSEDVQLMGMEGFYHPNTAAAAAAFYFDGHYMGDAHYRLGP 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3802660 3805214 - Carg23980-RA Car12g00568 158184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00568 307 MobiDBLite consensus disorder prediction 148 181 - -
Car12g00568 307 Pfam Homeobox KN domain 224 263 IPR008422 GO:0003677|GO:0006355
Car12g00568 307 ProSitePatterns 'Homeobox' domain signature. 242 265 IPR017970 GO:0000981|GO:0006355
Car12g00568 307 ProSiteProfiles ELK domain profile. 184 204 IPR005539 GO:0003677
Car12g00568 307 MobiDBLite consensus disorder prediction 153 181 - -
Car12g00568 307 Pfam KNOX1 domain 37 78 IPR005540 GO:0003677|GO:0005634
Car12g00568 307 Pfam ELK domain 184 205 IPR005539 GO:0003677
Car12g00568 307 ProSiteProfiles 'Homeobox' domain profile. 204 267 IPR001356 GO:0003677
Car12g00568 307 Pfam KNOX2 domain 91 136 IPR005541 GO:0003677|GO:0005634
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car05g00098 Car12g00568 CCT
Car09g00271 Car12g00568 CCT
Car01g01369 Car12g00568 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g00082 Car-Chr11:440410 Car12g00568 Car-Chr12:3802660 2.39E-65 dispersed
Car11g01493 Car-Chr11:12047728 Car12g00568 Car-Chr12:3802660 1.24E-70 dispersed
Car12g00568 Car-Chr12:3802660 Car04g01779 Car-Chr4:10166478 5.89E-67 dispersed
Car01g01369 Car-Chr1:12038100 Car12g00568 Car-Chr12:3802660 1.83E-117 wgd
Car12g00568 Car-Chr12:3802660 Car05g00098 Car-Chr5:503872 1.43E-156 wgd
Car12g00568 Car-Chr12:3802660 Car09g00271 Car-Chr9:1479832 2.72E-127 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4427 PF03791 KNOX2 2.20E-22 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00568 - - cpep:111798143 569.311