Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car12g00569 | ATGTCTATCGTGAAACGATATGCCCCACCGTCGCCGCACGTGTCGCCGCTCGATTCGCCCACGAGAGCGGTCATGGAGTTCGATTCGTCATTCTGGGAGGAACAGGATCTGCCGGCGGCGGTGGACGCGTTCACCTGCGACGATTTTCGTATGTACGAGTTCAAAGTTCGCTCGTGCGCACGTGGGAGGTCCCACGATTGGACTAAATGTCCGTACGCTCACGTCGGCGAGAAGGCTCGCCGCCGTGATCCGAGGAAGTTCAGCTATTCTGGCACTGAATGCCCTGCTTTACGCCATGGGTGTTGTAAGAAAGGGGACGCCTGTGAGTTCGCTCATGGTACATTCGAAAGTTGGCTCCACCCAGACCGGTACCGGACTCAGCCGTGCCGTGACGGAATCGCCTGCCGGCGGCGAGTCTGTTTCTTCGCCCATACGTTGGAGCAACTCCGGATTCCGGCGAAACAGAGCCTCATGTCTCCACGGGCGGCTAAGGAAATCGCCGCTGCTGTAACATCGCCGACGTCGATCCTAATCTCGCCGGATTCGCCTCCAATGTCTCCGATCAGCCCTGTAACCACCGGCGGCGAATCGTTCAGCAGATTAGTCCCACTGATGCACAATCTCCAGCTTGACAAATCAAAGAAAAATCCAGCCGTCTCCGGCTTCGATTCAAGCCCCCGGCGGAACTCCGGCGGGTTCGATCTGTGGGACAGAACTTTCGAAGAAGAACCGGCAATGGAGAGAGTGGAATCTGGAAGAAACCTCCGTGCCCAAATGTACGCCAAATTAATGAGAGAGAATTCGGTGGACAGAATCCGGCCACTGATATCGGCCGGATCTCAAAGCTAA | 849 | 56.54 | MSIVKRYAPPSPHVSPLDSPTRAVMEFDSSFWEEQDLPAAVDAFTCDDFRMYEFKVRSCARGRSHDWTKCPYAHVGEKARRRDPRKFSYSGTECPALRHGCCKKGDACEFAHGTFESWLHPDRYRTQPCRDGIACRRRVCFFAHTLEQLRIPAKQSLMSPRAAKEIAAAVTSPTSILISPDSPPMSPISPVTTGGESFSRLVPLMHNLQLDKSKKNPAVSGFDSSPRRNSGGFDLWDRTFEEEPAMERVESGRNLRAQMYAKLMRENSVDRIRPLISAGSQS | 282 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 3813502 | 3814350 | + | Carg23979-RA | Car12g00569 | 158185 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car12g00569 | 282 | ProSiteProfiles | Zinc finger C3H1-type profile. | 88 | 115 | IPR000571 | GO:0046872 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car12g00569 | Car-Chr12:3813502 | Car12g01256 | Car-Chr12:11829776 | 2.10E-74 | dispersed | |
| Car01g01366 | Car-Chr1:12022257 | Car12g00569 | Car-Chr12:3813502 | 7.30E-98 | wgd | |
| Car10g00622 | Car-Chr10:3158837 | Car12g00569 | Car-Chr12:3813502 | 1.12E-82 | wgd | |
| Car11g00553 | Car-Chr11:2977852 | Car12g00569 | Car-Chr12:3813502 | 1.13E-79 | wgd | |
| Car12g00569 | Car-Chr12:3813502 | Car05g00097 | Car-Chr5:498875 | 9.81E-147 | wgd | |
| Car12g00569 | Car-Chr12:3813502 | Car09g00274 | Car-Chr9:1495919 | 4.27E-88 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 4428 | None | None | None | None | Car | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car12g00569 | - | - | cpep:111798847 | 542.347 |