Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00573 ATGAAGAGAGGAAGGGATGATGAGAAGAGAATGGAACCTATGTTCCCTAGGCTCCATATTAATGATACCGAGAAAGGATGTCCTAGAGCGCCTCCAAGGAATAAGATGGCCCTGTATGAACAGTTCACTGTACCATTAAAACGTTCCACTCCCGGGGTTTTGCCTCTCCCCACAAACATCTCCAGAAAGCCACTCACCGCACCATCCTCAAGCCAGGGTAGAGGAACTGATGGAAATCTGCGGCTAAACTCGTCTTCCCCGACTCCTAATCAGATTGGAAATTCACATGCTCACCCATCTAGTGAAGTAAATGTGAATCCTGCATCGGTACAGCTCGAGCGGAGGCAGCAGACAGCAGAAGTAGAAGATGAAGACGATTTTACGGTTCCAGTATACAACCAATCAGAGATGGGTAAAAATAGAGTTCAAAATAGTGACCATAAGGAACAATTGTCGTTTCCTGGATCAAAACATTCTGATTGTTCTACAGTTTTGCAATCATCCTCTGTTGCCCAATCAAGTCGAGAAGTAACAACTAGGAAGACAGTGAATGACAAACGTAGGGACGGTTCTGCGAAGTCCACGACAAATTTATTGGATAGAGAGGGTACTGATGGACTTCAGAAGGAAACTAATGTATCTGAAGATCAAGAATTTCAAGATAAATCGAACATTAGTGTTGACAAGTTGCAAGATAGTGATGTTCAATTACAGAGACATTCTAGTTCCAGCACTCAATTGGATGAGAGTGGACTTGTTGAGGACGTTATTGAGCCTACAAGATTTCGAGTGGTAGACAGTGTTCCCTGCACAAGAGTGGACTCCCATTCCTTGGAAAAGAATGAGAACTTGAACATGCCTGTTGACAACATTAAGAATCGTGTAGATAGGACTCATAGTTCCGTGCACGTGGGGAATGCAGACAAAAGTGACATTGTCTCTGAGAATTCAATGGTCGACTCAATTTCTGGCTCGGATATCTGTCCAGATGATGTTGTAGGGCTAATAGGTCAAAAACGCTTCTGGAAAGCCAGAAGAGCAATTATTAACCGATTGCTAAGCTCTGGGACGCCTCGTAATCGATTTGATTTGTTCTTTCAACTTTTGTTACTCTACAGTCAACAAAGAGTATTTGATGTTCAAGTGTTCGAATTGCATAGACTTATCAAGGTCCAACGCTTAATTGCTGGATCACCTCATCTTTTATTTGAAGATGGGATTTTTCTGGACAATTCTCCTCCAAGTCGTCTTCCTACGAAGAAACTTTGCTCAGATTACGCCATCAAATCGCACGTCGAGCTTAAGCACAATGATGACCCGAAGAAGCCAAAACACAATGTGGAATGTTCAGCAGAGAACGCTGTTGGGAAGACTTCTCTTTCTCCTGCACCGGTTGCACCGGTCTGTTGTCAGCCTTCAACGAACGGGCCTTACAGAGTAAATCGACAGCCAACGTCTGTTTCCGCTGATAATAAATTAAGCAGTTGGTACCAGCCATCTGCAGCACATCAGTGGCTGGTCCCGGTATTGTCTCCTTCTGAAGGACTCGTATATAAGCCTTACCCTGCGCCCGGATTCATGTATGGAGGATGTGCACCTTATGGTCCGATGACTCCAATCATGAATCCGTCCTACGGATTTCCAGCTTCTGCTCATCATGGAATTGGGGCGCTTCCTAGTACTCCCATGGTTGGTGGTACTTACTTCCACCCTTATGGCATGCCGGTGATGAATCCTGGTATGTCGGGTTTGCCCCTCGATCAAGTTAACTGGTATACGGGAGATCAGAATCAGTTATCGGGAGGTGTGGCTGCTTACTATATGCAGCATCAAACATCATATGATGTTTCAACACAGAGAGACAGAGATGAAAATCAAGAAACTGTTTCACTAACTGCAAAGTCTCAAGCACCAAAAAGCAATGAGCTACAAGCAAGTACTGCAAGTAGTCCTGCTGGAAAACTGCAAGGAAACGAAGCGAATCGAACCGCTGAAAGCCACGACGTGCTTCCACTTTTCCCTATAGCTCAGCCACTTACAGAGGAAGGTCCTCAACCTTCAGACTCCGACCAAACGAAACGGGTGATTCGAGTCGTGCCACACAATCGGAGATCGGCGAACGAATCAGCTGCTCGTATTTTCCAATCGATTCAAAATGAGAGAAAACAGTATGACTCAATTTAG 2184 44.78 MKRGRDDEKRMEPMFPRLHINDTEKGCPRAPPRNKMALYEQFTVPLKRSTPGVLPLPTNISRKPLTAPSSSQGRGTDGNLRLNSSSPTPNQIGNSHAHPSSEVNVNPASVQLERRQQTAEVEDEDDFTVPVYNQSEMGKNRVQNSDHKEQLSFPGSKHSDCSTVLQSSSVAQSSREVTTRKTVNDKRRDGSAKSTTNLLDREGTDGLQKETNVSEDQEFQDKSNISVDKLQDSDVQLQRHSSSSTQLDESGLVEDVIEPTRFRVVDSVPCTRVDSHSLEKNENLNMPVDNIKNRVDRTHSSVHVGNADKSDIVSENSMVDSISGSDICPDDVVGLIGQKRFWKARRAIINRLLSSGTPRNRFDLFFQLLLLYSQQRVFDVQVFELHRLIKVQRLIAGSPHLLFEDGIFLDNSPPSRLPTKKLCSDYAIKSHVELKHNDDPKKPKHNVECSAENAVGKTSLSPAPVAPVCCQPSTNGPYRVNRQPTSVSADNKLSSWYQPSAAHQWLVPVLSPSEGLVYKPYPAPGFMYGGCAPYGPMTPIMNPSYGFPASAHHGIGALPSTPMVGGTYFHPYGMPVMNPGMSGLPLDQVNWYTGDQNQLSGGVAAYYMQHQTSYDVSTQRDRDENQETVSLTAKSQAPKSNELQASTASSPAGKLQGNEANRTAESHDVLPLFPIAQPLTEEGPQPSDSDQTKRVIRVVPHNRRSANESAARIFQSIQNERKQYDSI 727
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3838682 3842724 + Carg23975-RA Car12g00573 158189

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00573 727 MobiDBLite consensus disorder prediction 111 130 - -
Car12g00573 727 MobiDBLite consensus disorder prediction 615 664 - -
Car12g00573 727 MobiDBLite consensus disorder prediction 155 178 - -
Car12g00573 727 MobiDBLite consensus disorder prediction 135 249 - -
Car12g00573 727 MobiDBLite consensus disorder prediction 629 663 - -
Car12g00573 727 MobiDBLite consensus disorder prediction 62 103 - -
Car12g00573 727 MobiDBLite consensus disorder prediction 179 195 - -
Car12g00573 727 MobiDBLite consensus disorder prediction 1 103 - -
Car12g00573 727 MobiDBLite consensus disorder prediction 229 249 - -
Car12g00573 727 MobiDBLite consensus disorder prediction 203 228 - -
Car12g00573 727 MobiDBLite consensus disorder prediction 1 29 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00573 K12125 ELF3; protein EARLY FLOWERING 3 - csv:101203735 1066.6
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car05g00094 Car12g00573 CCT
Car05g00094 Car12g00573 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00635 Car-Chr8:4094319 Car12g00573 Car-Chr12:3838682 3.91E-16 dispersed
Car12g00573 Car-Chr12:3838682 Car17g00698 Car-Chr17:6387155 3.15E-95 dispersed
Car12g00573 Car-Chr12:3838682 Car05g00094 Car-Chr5:479267 6.70E-72 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g48 . . Bda01g00608 Bda03g00152 Bpe02g01532 Bpe02g00476 . . Cmo05g00115 Cmo12g00565 . Cma05g00109 . Car12g00573 Sed08g1747 Cpe07g00546 . Bhi04g00485 Tan02g1661 Cmetu03g0883 . Hepe08g1374 . Lcy13g2170 . . . . . . . . . Cone17ag0912 Cone20ag0255 . . . . Blo17g00297 Blo18g00293 Bda01g01321 Bda13g01613 Bpe14g00253 . Bma01g00931 . . . . . . . Car05g00094 Cpe11g00089 . . . . . . . . . . . . . . . Lsi08g01566 Csa02g01855 Chy03g01629 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005519 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 3 1 2 2 1 1 1 1 1 1 2 1 1 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car12g00573 Car_Chr12 FPKM 0.0 0.0 0.0 0.031325 0.0 0.0 0.0 0.156823 0.067967 0.033453