Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00574 ATGGTGAATTTTTTGCTTAAGATCAAAGCGGAGCTCGAGAACCTCACGAATCTTCAGCCCCAAGATGGTTGCGATGATCCCAATTTCCCTTACCTTTTCAAAGTCAAATGCGGGAGATGCGGAGAGTTGAGCCAGAAAGAAACTTGTGTGACCTTGAATGAAACTATTCCTCTCCAAGCGGGTAAAGGGACTACTAATCTCGTTCAAAAGTGCAAGTTCTGTGGGAGGGATGGAACTATTACAATGATTCCGGGGCGAGGTCAACCATTGACTCAGGAAACAAGTGAATCAGGGAAGTCATCTCCTTTGATGTTATTTGACTGCAGAGGTTACGAGCCTGTGGGCTTCATATTTGGACCTGGATGGAAAGCAGAATCTATAGAAGGGACTAAGTTCGAGGACATTGACTTGTCTGGAGGTGAGTATGCAGAGTACGATGAGAAGGGAGAATGCCCTGTCATGATTTCCAATCTAGAGGCCACATTTGAGTCGGTAAAGTAG 501 45.31 MVNFLLKIKAELENLTNLQPQDGCDDPNFPYLFKVKCGRCGELSQKETCVTLNETIPLQAGKGTTNLVQKCKFCGRDGTITMIPGRGQPLTQETSESGKSSPLMLFDCRGYEPVGFIFGPGWKAESIEGTKFEDIDLSGGEYAEYDEKGECPVMISNLEATFESVK 166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3843432 3846595 + Carg23974-RA Car12g00574 158190

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00574 166 Pfam CXXC motif containing zinc binding protein, eukaryotic 6 162 IPR008584 -
Car12g00574 166 SUPERFAMILY MAL13P1.257-like 1 162 - -
Car12g00574 166 PANTHER UNCHARACTERIZED 1 166 IPR008584 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00574 - - - csv:101215208 322.398
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g50 . . . . Bpe02g01533 . . . . Cmo12g00566 . . . Car12g00574 . Cpe07g00547 . Bhi04g00488 . . . Hepe08g1376 . Lcy13g2172 . . . . . . . . . Cone17ag0914 Cone20ag0256 . . . . . Blo18g00292 Bda01g01322 . . . Bma01g00930 . . . . . Cma12g00626 . . . . . . . . . . . . . . . . . . Lsi08g01568 Csa02g01852 Chy03g01631 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011229 1 2 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car12g00574 Car_Chr12 FPKM 93.110695 95.114334 91.914558 88.818649 62.42062 52.06741 55.931873 174.786133 182.902496 180.386642