Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00576 ATGGCTAAAATCTCCACCGGAGCTTTGCTCCTTTTCTTTTCCCTCGCCGTAATCGGCTTGGCTTCCGGTGGCCGGGATCTTCCTGGAGATTTTCTGAGGTTGCCGTCCGAGGCCTTGAATTTTTTTCGCGGAGGAGCCTCCGATGCTAGCGATGAGGACTCCGTGGGAACGAGATGGGCCGTTTTGATCGCCGGTTCGAATGGATACTGGAACTACCGGCATCAGGCTGATATTTGCCATGCTTATCAACTATTGCGGAAAAATGGGCTAAAAGATGAAAACATCATTGTTTTCATGTACGATGACATTGCCTTCAATCCAGAGAACCCAAGACCTGGGGTCATCATCAACCATCCACAGGGTTCTGATGTTTATCATGGAGTCCCAAAGGATTACACTGGTGAGGATGTTAACGTGAACAACTTTTTTGCTGTCATTCTTGGAAACAGAACTGCTCTTACGGGGGGTAGTGGGAAGGTTGTTGACAGTGGTCCTAATGATCATATTTTCATATACTACAGTGATCATGGTGGCCCTGGTGTTCTTGGGATGCCTACTTATCCCTATATGTATGCTGATGATCTTAATGACGTTTTAAAGAAGAAGCATGCTTCTGGATCCTACAAAAGTCTGGTATTCTATCTTGAAGCTTGTGAATCGGGAAGTATCTTTGAAGGCCTTCTTCCTAAAGGCTTGAACATTTATACAACCACCGCATCAAATGCTTATGAGAGCAGTTGGGGTACTTACTGCCCAGGGGATTATCCTAGTCCTCCACCAGAGTATGATACTTGCTTGGGTGACTTGTACAGTGTTGCTTGGATGGAAGACAGTGATAATCACAATTTGAAGACGGAAACTTTACGCCAACAATATGAACTGGTGAAGAAAAAGACGCTAAATGCCAATTATGCTTATGGTTCTCATGTCATGCAATATGGTGATCTAACGCTCAGCAAGGACGCTTTGTCCTCATATCTGGGTACTGATCCTGCTAATGAGAACAACACTTTTGTCGAGGAGAACTCTTTGAGGCCAACAGCAAAAGTTACGAATCAGCGTGACGCTGATCTTGTCCACTTTTGGGAAAGGTTTCGCAAAGCTCCTGAAGGCACCACCAAGAAAGTTGAAGCTCAGAAGAAGTTTGTGGAAGCAATGTCCCACAGAGTTCATATCGACAACAGTGTGAAGCTAATTGGAAAGGTGCTATTTGGGATTGAAAAAGGTCCTGAGGTGCTCAATGCCATCCGACCCACCGGACAACCCCTTGTCAATGACTGGGACTGTCTTAAGGATATGGTCAGGAGCTTTGAGGCACGCTGTGGATCCCTCTCCCAATACGGAATGAAACACATGAGGTCCTTCGCAAACTTCTGCAATGCTGGGATCAGCAAGGAGCAGATGGCGGAGGCTTCGGCGCAAGCTTGCGTAAGCGTCCCCTCGGGTCCATGGAGTTCTCTGCACAAGGGCTTCACTGCTTGA 1482 46.69 MAKISTGALLLFFSLAVIGLASGGRDLPGDFLRLPSEALNFFRGGASDASDEDSVGTRWAVLIAGSNGYWNYRHQADICHAYQLLRKNGLKDENIIVFMYDDIAFNPENPRPGVIINHPQGSDVYHGVPKDYTGEDVNVNNFFAVILGNRTALTGGSGKVVDSGPNDHIFIYYSDHGGPGVLGMPTYPYMYADDLNDVLKKKHASGSYKSLVFYLEACESGSIFEGLLPKGLNIYTTTASNAYESSWGTYCPGDYPSPPPEYDTCLGDLYSVAWMEDSDNHNLKTETLRQQYELVKKKTLNANYAYGSHVMQYGDLTLSKDALSSYLGTDPANENNTFVEENSLRPTAKVTNQRDADLVHFWERFRKAPEGTTKKVEAQKKFVEAMSHRVHIDNSVKLIGKVLFGIEKGPEVLNAIRPTGQPLVNDWDCLKDMVRSFEARCGSLSQYGMKHMRSFANFCNAGISKEQMAEASAQACVSVPSGPWSSLHKGFTA 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3852110 3856656 - Carg23972-RA Car12g00576 158192

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00576 493 Pfam Peptidase C13 family 58 328 IPR001096 GO:0006508|GO:0008233
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00576 K01369 LGMN; legumain [EC:3.4.22.34] - csv:101216082 928.702
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car05g00091 Car12g00576 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02930 Car-Chr4:22004052 Car12g00576 Car-Chr12:3852110 8.75E-24 transposed
Car10g00577 Car-Chr10:2912710 Car12g00576 Car-Chr12:3852110 2.35E-170 transposed
Car15g01047 Car-Chr15:8230891 Car12g00576 Car-Chr12:3852110 0 transposed
Car12g00576 Car-Chr12:3852110 Car05g00091 Car-Chr5:461592 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g53 . . . . Bpe02g01534 . . . Cmo05g00111 Cmo12g00569 . Cma05g00105 . Car12g00576 Sed08g1757 Cpe07g00549 . Bhi04g00491 Tan02g1654 Cmetu02g1720 . Hepe08g1379 . Lcy13g2174 . . . . . . . Cone4ag1649 Cone7ag1300 . Cone20ag0258 . . . . Blo17g00296 Blo18g00291 Bda01g01323 Bda13g01611 Bpe14g00254 . Bma01g00929 . . . . . Cma12g00628 . Car05g00091 Cpe11g00085 . . . . . . . . . . . . . . . Lsi08g01572 Csa02g01849 Chy03g01635 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005098 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 2 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car12g00576 Car_Chr12 FPKM 8.004386 7.071914 1.857298 1.739643 2.096332 1.713519 2.443112 0.0 0.0 0.474745