Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00580 ATGGCTGACGAAGCGCAGTATTCATCTGGTACTGATGTTGCGTCCAATAAGCGCAAGTACGATGACCATCCTCCACCTATGGTTTCCCGCCGGCCGACTGGTTTTTCCGGCCCCATCACTTCCCCCTCCTCCGATACGGCCAATCCTCCGCCTCCCTCCTACAACAACGTCCCGCCCCCTATGGATGAGATCCAGCTTGCTAAGCAGCGTGCTCAGGAAATTGCCTCTCGGTTGATTATCTCCAGTGGTGGCGTCGGGGCCGGCGCTGGACCTGGCGTTGGGGCTGATGCCAAGCGCCCAAGGGTTGAGAATGGCGGCGGGTTTGATTCATACGAAAAGGGTTTTAGTTCTGGCTCAGACTTAAAGTCTCACTTGTCTAATTCAGCTCCTTCAGCAACACCTGTTTCCTATGGGTTTCAAGGGACAAGCAAGAAAATCGACATTCCAAATGGTAGAGTGGGTGTAATTATTGGTAAAGGTGGTGAGACCATCAAGTACCTTCAGCTCCAGTCTGGGGCAAAAATACAAGTTACTCGTGACATGGATGCAGATCCCAATTCTGCTACCCGGACGGTTGATCTAATGGGTACTCCTGATCAAATTGCTAAGGCCGAGCAGTTGATTAATGATGTTCTTTCCGAGGCTGAATCTGGAGGTTCTGGCATAGTATCTCAAAGATTGACTGGTTCATCGGGATCTGAGCAGTTTGTTATGAAAATTCCCAATAATAAGGTTGGCTTGGTTATTGGTAAAGGTGGTGAAACAATCAAAAGTATGCAAGCCAGGACTGGAGCTCGTATTCAGGTGATACCTTTGCACTTACCCCCTGGGGATACATCTACAGAAAGAACCTTACAGATTGATGGTTCAAGCGAACAGATTGAGTCAGCAAAACAGTTGGTTAATGAAGTTACCAGTGAGGTGCGTTTGCAGATTTTGGTTCCATTAAGATTGTTATGCCCTTTTGTAGTAGGAACTAATGCATAG 987 48.02 MADEAQYSSGTDVASNKRKYDDHPPPMVSRRPTGFSGPITSPSSDTANPPPPSYNNVPPPMDEIQLAKQRAQEIASRLIISSGGVGAGAGPGVGADAKRPRVENGGGFDSYEKGFSSGSDLKSHLSNSAPSATPVSYGFQGTSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNSATRTVDLMGTPDQIAKAEQLINDVLSEAESGGSGIVSQRLTGSSGSEQFVMKIPNNKVGLVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSTERTLQIDGSSEQIESAKQLVNEVTSEVRLQILVPLRLLCPFVVGTNA 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3870510 3874029 - Carg23968-RA Car12g00580 158196

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00580 328 ProSiteProfiles Type-1 KH domain profile. 141 208 - -
Car12g00580 328 Coils Coil 287 307 - -
Car12g00580 328 Pfam KH domain 237 303 IPR004088 GO:0003723
Car12g00580 328 Pfam KH domain 145 210 IPR004088 GO:0003723
Car12g00580 328 MobiDBLite consensus disorder prediction 87 109 - -
Car12g00580 328 MobiDBLite consensus disorder prediction 1 61 - -
Car12g00580 328 MobiDBLite consensus disorder prediction 44 58 - -
Car12g00580 328 ProSiteProfiles Type-1 KH domain profile. 233 301 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00580 K13210 FUBP; far upstream element-binding protein - csv:101216803 525.783
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car05g00374 Car12g00580 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g01079 Car-Chr11:8406362 Car12g00580 Car-Chr12:3870510 4.50E-85 dispersed
Car12g00580 Car-Chr12:3870510 Car19g00476 Car-Chr19:6404803 3.04E-51 dispersed
Car12g00580 Car-Chr12:3870510 Car05g00088 Car-Chr5:446645 3.01E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g62 . . . . . . . . Cmo05g00109 Cmo12g00572 . Cma05g00102 . Car12g00580 Sed08g1760 Cpe07g00553 . Bhi04g00496 Tan02g1648 Cmetu03g0500 . Hepe08g1383 . Lcy13g2177 . . . . . . . Cone4ag1652 . Cone17ag0917 Cone20ag0260 . . . . Blo17g00293 Blo18g00287 . Bda13g01608 Bpe14g00257 . . . . . . . Cma12g00631 . Car05g00374 Cpe11g00082 . . . . . . . . Cla08g01021 Cam08g1470 Cec08g1048 Cco08g1172 Clacu08g1174 . Cre08g0956 Lsi08g01575 Csa02g01846 Chy03g01638 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007208 1 1 2 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car12g00580 Car_Chr12 FPKM 0.290104 0.267386 0.251517 0.339426 1.489321 1.529905 1.873147 0.830063 1.296404 1.306169