Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00581 ATGGGGGATTCGAGTGACTCAATGTCGGTGGATATGGAGTCGATTTCTTCTGGTGGAAAGGAGTATCTTGTGAAAACTTGTTCTGGTGCTGTTTCTGTCACTGTGATTGGAGACCAGGACAAACCAGCTCTAATCACTTATCCTGATTTAGCTCTAAATCATATGTTCTGCTTCCAAGGATTAATGTTTTGTCCAGAAACGTGTTCGTTATTGCTTCACAACTTTTGCATATATCATATCAGCCCTCCTGGACATGAGTTAGGAGCTGCTGCGATTTGCCCTGATGATCCTGTACTTTCTGCAGATGACTTGGCAGATCAAATTGCTGAAGTTCTTAACTATTTTGAGCTGAGTGCTGTAATGTGTATGGGGGTTACTGCTGGAGCATACATCCTTACTCTCTTTGCTATGAAGCACATTCATCGTGTTCATGGTTTGATATTGATCTCTCCCATATGCACAGCACCCTGTTGGACAGAATGGTTGTGTAACAAGGTGATGTCAAATTTGGTTTATTTTTATGGCATGTGTGGGGTAGTGAAGGAGTTTTTGCTAAAGCGGTATTTCAGTAAGGAGGCTCGTGGTTGTTCTCAAGTACCAGAGTCTGATTTAGTTAAAGCATGCAGAAGATCGCTTGATGAGCGGCAAAGTTCAAATGTCTGGAGGTTTCTTGAAGCGATGAATGGGAGACCTGACATTTCAGAAGGGCTGCGAAAACTTAAGTGCCGTTCATTGATATTTGTTGGGGACAGGTCTCCGTTTCATTCAGAGGCTCTTCACATGACTGTAAAACTAGACAGAAGAAACAGTGCCCTTGTCGAAGTTCAGTCATGTGGGTCCATGGTGACGGAGGAGCAGCCCGACGCAATGTTGATACCTATGGAGTATTTTCTCATGGGATATGGCATGTATAGGCCATCTCACGTCAGTGTTAGCCCAAGGAGCCCCTTGAGCCCTTCTTTCATTGCTCCAGAGCTTCTGTCTCCAGAAAGTATGGGCTTGAAGTTGAAACCAATAAAAACAAGAATCTCCTTGGAAGTCTGA 1044 43.87 MGDSSDSMSVDMESISSGGKEYLVKTCSGAVSVTVIGDQDKPALITYPDLALNHMFCFQGLMFCPETCSLLLHNFCIYHISPPGHELGAAAICPDDPVLSADDLADQIAEVLNYFELSAVMCMGVTAGAYILTLFAMKHIHRVHGLILISPICTAPCWTEWLCNKVMSNLVYFYGMCGVVKEFLLKRYFSKEARGCSQVPESDLVKACRRSLDERQSSNVWRFLEAMNGRPDISEGLRKLKCRSLIFVGDRSPFHSEALHMTVKLDRRNSALVEVQSCGSMVTEEQPDAMLIPMEYFLMGYGMYRPSHVSVSPRSPLSPSFIAPELLSPESMGLKLKPIKTRISLEV 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3879676 3883525 + Carg23967-RA Car12g00581 158197

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00581 347 Pfam Ndr family 24 305 IPR004142 -
Car12g00581 347 PANTHER N-MYC DOWNSTREAM REGULATED 1 347 IPR004142 -
Car12g00581 347 PANTHER PROTEIN NDL2 1 347 - -
Car12g00581 347 SUPERFAMILY alpha/beta-Hydrolases 36 298 IPR029058 -
Car12g00581 347 Gene3D alpha/beta hydrolase 15 300 IPR029058 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00581 - - - csv:101217037 652.129
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car05g00087 Car12g00581 CCT
Car11g00564 Car12g00581 CCT
Car10g00634 Car12g00581 CCT
Car05g00087 Car12g00581 ECH
Car11g00564 Car12g00581 ECH
Car10g00634 Car12g00581 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00634 Car-Chr10:3223923 Car12g00581 Car-Chr12:3879676 0 wgd
Car11g00564 Car-Chr11:3022807 Car12g00581 Car-Chr12:3879676 1.55E-149 wgd
Car12g00581 Car-Chr12:3879676 Car05g00087 Car-Chr5:439275 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g66 Blo01g01473 . Bda01g00613 . . Bpe02g00482 . Bma01g02219 Cmo05g00108 Cmo12g00573 . Cma05g00101 . Car12g00581 Sed08g1762 Cpe07g00554 . Bhi04g00498 Tan02g1646 . . Hepe08g1384 . Lcy13g2178 . . . . . . . Cone4ag1654 Cone7ag1297 Cone17ag0920 Cone20ag0263 . . . . . . . . . . . . . . . . Cma12g00632 . Car05g00087 Cpe11g00081 . . . . . . . . . . . . . . . Lsi08g01576 Csa02g01844 Chy03g01639 .
Vvi11g208 . Blo16g00990 . Bda11g01057 . . . . . Cmo11g00691 . Cma12g00632 . Car12g00581 Sed08g0862 Cpe04g01066 Cpe18g00370 Bhi02g01915 Tan09g1166 Cmetu02g1344 . . . . . . . . . . . . . . . Lsi06g00261 . . Cme02g00220 . . . . . Bpe13g01260 Bma01g00228 Bma06g00858 . . Cmo12g00573 Cma10g00705 Cma11g00680 Car10g00634 Car11g00564 . . . . . . . . . Cla03g01514 Cam03g1592 Cec03g1635 Cco03g1629 Clacu03g1615 Cmu03g2170 Cre03g1845 . Csa01g02907 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000907 5 5 3 4 3 2 4 2 2 1 2 2 3 2 2 4 2 7 4 2 2 2 2 2 2 2 2 4 5 3 87
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car12g00581 Car_Chr12 FPKM 0.171364 0.0 0.208768 0.0 0.180484 0.064196 0.66287 0.130825 0.376545 0.0