Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00582 ATGATGATTCAGATTGATGAGAGGTACACTCAATGCTTGGACGAGATTCATACTGTTACATCTGCATTTCATGCTGCCACCGATTTGGATCCTCGCTTGCATTTTCATTATACTTACCAGACAATCACTTCTGTGTATAAAAGCCTGAGGGAGAAGATTACTAATTGTATCCTTGCAATGGGAATGCATTCTAACACAGTGTGCACCAAGGAGAAGGAAAAGTCCTTCGAGACAACGTTCATTCGGAATCAGTGGGCTCTCCAGCAGTTGAAAAGGAAAGATAATCAATTATGGAGGGCACAGAGAGGCTTGCCTGAAAACTCTGTCTCAGTTCTAAGGGCGTGGATGTTTCAGAACTTTCTCCATCCGTACCCCAAGGACACAGAGAAGCACTTACTTGCAGTAAAAAGTGGATTAACCAGAAATCAGGTATCTAATTGGTTTATCAATGCACGTGTCCGGTTGTGGAAACCGATGATCGAAGAAATGTATGCTGAAATGAGCAGAAGAAATTCCTTTCAAAATGATGAAGGATGA 537 41.9 MMIQIDERYTQCLDEIHTVTSAFHAATDLDPRLHFHYTYQTITSVYKSLREKITNCILAMGMHSNTVCTKEKEKSFETTFIRNQWALQQLKRKDNQLWRAQRGLPENSVSVLRAWMFQNFLHPYPKDTEKHLLAVKSGLTRNQVSNWFINARVRLWKPMIEEMYAEMSRRNSFQNDEG 178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3883564 3887122 - Carg23965-RA Car12g00582 158198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00582 178 Pfam Associated with HOX 1 54 IPR006563 -
Car12g00582 178 Pfam Homeobox KN domain 115 154 IPR008422 GO:0003677|GO:0006355
Car12g00582 178 ProSiteProfiles 'Homeobox' domain profile. 95 158 IPR001356 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car05g00086 Car12g00582 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00582 Car-Chr12:3883564 Car14g00330 Car-Chr14:1571650 1.04E-45 dispersed
Car12g00582 Car-Chr12:3883564 Car05g00086 Car-Chr5:436930 1.12E-110 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4430 PF07526 POX 1.90E-09 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00582 - - csv:101204223 322.398