Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00589 ATGGGCAATTCATCCTGTAGTGTATCTGAGTTAGAACTCTGTAGAGATGATTCGGCAGCGCTTAATTTCAAATTAATCGCCATTGCCTCGATTCTCACATCCGGAGTTTTGGGAATTGCCATTCCGTTATTCGGCAGACATCGCCGGTTTCTCAAAACGGATGGCAATCTCTTTGTAGCGACTAAGGCGTTTGCTGCCGGCGTGATTCTTGCGACGGCGTTTGTTCATATGCTTCCTGATGGATCGAAAGCTCTCTCCGATCCGTGCTTGCCGGAATTTCCATGGTCGAAATTCCCCTTCTCTGGATTCTTCGCGATGATGGCGTCGCTTTTGACGCTCCTCGTCGATTTCGTTGGAACTCAGTATTACGAGAGGAAACAGGGGCAGATTCGATTGAAAGAAGAAACGAATCGGGTCGGGTCGGGCTTGGATTCCGGGTTGGAGGCTGGGATTCTCCCGGCCGCCGATTCGAACGTGAAAGTGTTCGGTGAAGAGGATGGTGGCGGGATGCACATCGTCGGAATGCATGCACACGCCGCGCAACACCGTCACAGTCATCCGCAGGGGAAGGATGCATGTGACGGGCACGTGACACTCCATGATCATGGCCATGGTCATTCTCATGGGCTCGACGGCGACGATGACGAAAGCGGTGTACGACATGTCGTTGTTTCCCAGATTTTGGAGCTTGGAATAGTGTCGCATTCAGTGATAATTGGGCTGTCTCTTGGAGTGTCCCACAGCCCATGCACCATAAGACCCTTAATTGCAGCTCTCTCGTTCCATCAATTCTTTGAAGGCTTTGCTCTTGGTGGCTGCATCTCTCAGGCTCAGTTCAACACCCTCTCAACCTCCCTCATGGCTGTGTTTTTCGCCGCCACCACGCCCGTCGGGATTGCCATCGGCACGGCGATCTCCTCCACCTACAACCCGAACAGCACCGGAGCGTTGGTTGCCGAAGGCATTTTGGACTCTCTATCAGCTGGGATTCTGGTGTATATGGCTTTGGTTGATTTGATCGCTGCTGACTTTCTTAGCAAGAGAATGAGCTGCAATTTTCGACTCCAAATTGTTTCGTATTGTACGCTCTTTCTCGGTGCGGGATTGATGTCGTTGCTCGCGCTATGGGCTTGA 1134 51.85 MGNSSCSVSELELCRDDSAALNFKLIAIASILTSGVLGIAIPLFGRHRRFLKTDGNLFVATKAFAAGVILATAFVHMLPDGSKALSDPCLPEFPWSKFPFSGFFAMMASLLTLLVDFVGTQYYERKQGQIRLKEETNRVGSGLDSGLEAGILPAADSNVKVFGEEDGGGMHIVGMHAHAAQHRHSHPQGKDACDGHVTLHDHGHGHSHGLDGDDDESGVRHVVVSQILELGIVSHSVIIGLSLGVSHSPCTIRPLIAALSFHQFFEGFALGGCISQAQFNTLSTSLMAVFFAATTPVGIAIGTAISSTYNPNSTGALVAEGILDSLSAGILVYMALVDLIAADFLSKRMSCNFRLQIVSYCTLFLGAGLMSLLALWA 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3928794 3929993 - Carg23958-RA Car12g00589 158205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00589 377 Pfam ZIP Zinc transporter 22 374 IPR003689 GO:0016020|GO:0030001|GO:0046873|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00528 Car-Chr2:4121474 Car12g00589 Car-Chr12:3928794 7.08E-41 transposed
Car03g01144 Car-Chr3:9181883 Car12g00589 Car-Chr12:3928794 1.56E-95 transposed
Car09g00912 Car-Chr9:5613211 Car12g00589 Car-Chr12:3928794 3.90E-10 transposed
Car13g00334 Car-Chr13:6020668 Car12g00589 Car-Chr12:3928794 2.46E-07 transposed
Car13g00984 Car-Chr13:9823321 Car12g00589 Car-Chr12:3928794 1.09E-92 transposed
Car12g00589 Car-Chr12:3928794 Car05g00080 Car-Chr5:413327 3.88E-123 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00589 K14709 - csv:101218224 657.136