Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00600 ATGCCTCCCTCCACGCATCAACCTGATGATGGGTTTCCCTTGAACACCACGGCCGTCGCCATTGACAAGGATAAGAATAGCCAACACGCCGTACAGTGGGCTATTGATCATCTCGTCATAAGCAACCCGCTTATAATTCTCATCCATGTTAGGCATAAAACCAATCAACATCAGGGCGCAAGCGATTCTGAAAATGGCGAAATTGATGCGCAGCAGCTGTTTGTTCCCTATCGTGGATATTGTGCGCGTAAAGGGGTTCAGCTGAAGGAGGTTGTTCTTGACGATACCGATACTCCCAAAGCACTCGTCGACTACGTTCACAAAAATTGCATCAACAATTTTGTAGTTGGAGCTTCAACAAGGAGCGCTCTAGCAAGGAAATTTAAAGGTCCTGATATTCCGACCAGCATAATAAAAACTGCCCCGGACTTTTGTTCTGTATATGTAATATCAAAGGGGAAGATAATATCTGCCAGGGCTGCTCTTCGGCCAGTGGCGAATACTGCCATGCCACCAAGACAACCATCACCGCTTGGAATGCAGCCAAATAATCAACCAGACAGCAACAATGAACAAGAAAATGGAGCCAAAGGGCAACCAGCAAGGGAAGGTTGGAAGACTGCAGCTACAGAGAGAATGCTCAATGAAAGGAATGGTGCAAAGCCGGCAAAAGCGTTGACTCGTGAGAGGCCAAAAACTTCTCCGGCTAATATAACATTGGAAAATATCGAGGCTCCAAATCGAGGTTCTAGGCCTTCATTTAGTCGTGATTCGGTCTCTGACGAACATGTGTTGACAGCACAGATTCCTTTTGGTTCAATGGATGCGAGTGGTCAAAATTTAGATTTTAGTTCTAGCTCAGTTGGTTCAATGGACTCTGCTTCTGCACAATCGACTCGAGAACTAGAGGCCGAGATGAAAAGATTGAAGCTGGAATTAAAGCAAACCATGGATATGTATAGCTCAGCCTGCAAAGAGGCAATCTCAGCCAAGAACAAGGCAAGAGAACTGAGCCAGTGGAAGCAAGACGAGGCACGTAAGTTTGAAGAAGTCAGACTAGCTGAAGAAGCTGCTCTTGCTATTGCGGAGATGGAGAAAGCCAAGTGCAAAGCTGCCATTGAAGCAGCAGAGGCAGCGCAAAAGCTAGCCGAAAGAGAAGCCCAGAGAAGAAAACAGGCTGAAATGAAGGCCAGAAAAGAGACCGAAGAGAAAAAACGAGCATTGAATGCTCTAGCACAGAACGACGTCCGTTATAGAAAATACACCATAGAAGAGATAGAGGAATCTACTGAAATGTTCTCTGAAAAATTGAAGATTGGAGAAGGTGGATATGGTCCTGTTTATGGAGGCAAACTTGATCATACCGCCGTTGCAATTAAAGTTTTAAGACCCGACGCTGCTCAAGGACGGAAGCAATTCCAACAAGAGGTGGAGGTCCTCTGTTGTATTAGACATCCAAACATGGTGCTCCTTCTTGGGGCATGCCCTGAGTATGGTTGCTTGGTGTATGAGTACATGCATAATGGGAGCTTAGAAGACAGACTCTTCCGGAGAGGGAATACTCCTCCAATCTCTTGGAGACGACGATTCAAGATAGCTGCTGAAATCGCAACCGCACTCCTTTTTCTTCACCAAGCAAAGCCAGAGCCACTGGTGCATAGGGACCTTAAACCAGCTAACATTCTCTTGGACCGCAATTACGTGAGCAAAATCAGTGATGTTGGCCTGGCTCGGTTAGTCCCTCCTTCGGTTGCTGATCAAGTCACCCAATATCATCTGACTTCAGCAGCTGGCACGTTTTGTTACATCGATCCTGAGTACCAACAAACAGGACAGTTAACAACAAAATCAGATATTTACTCTTTTGGAATAATGTTACTTCAAATCATTACTGCCAAACCTCCAATGGGTTTAGCTCACCATGTTCAAAGGGCTATCGAAAAAGAGCGGTTCAATGAGATGCTGGATCCTACAATTTCAGATTGTCCATTGGAGGAGGCTATACATTTTGCAGAACTGGCTTTGAAGTGCGCTGAACTGAGGAAGAGAGACAGACCAGATCTTGGAACTGTTATAGTTCCAGAGCTCAACAGGTTAAGAGATCTCGGGAGGAGTTCTGACAAACGCGATGGTCGGAATCAGTTTCCACGCTCTGCCGCATCGAGTTCCAGTTTGAGGGCGCAGTCATCGAATGAGGTCCACAACTTACATATAATTTAG 2220 45.77 MPPSTHQPDDGFPLNTTAVAIDKDKNSQHAVQWAIDHLVISNPLIILIHVRHKTNQHQGASDSENGEIDAQQLFVPYRGYCARKGVQLKEVVLDDTDTPKALVDYVHKNCINNFVVGASTRSALARKFKGPDIPTSIIKTAPDFCSVYVISKGKIISARAALRPVANTAMPPRQPSPLGMQPNNQPDSNNEQENGAKGQPAREGWKTAATERMLNERNGAKPAKALTRERPKTSPANITLENIEAPNRGSRPSFSRDSVSDEHVLTAQIPFGSMDASGQNLDFSSSSVGSMDSASAQSTRELEAEMKRLKLELKQTMDMYSSACKEAISAKNKARELSQWKQDEARKFEEVRLAEEAALAIAEMEKAKCKAAIEAAEAAQKLAEREAQRRKQAEMKARKETEEKKRALNALAQNDVRYRKYTIEEIEESTEMFSEKLKIGEGGYGPVYGGKLDHTAVAIKVLRPDAAQGRKQFQQEVEVLCCIRHPNMVLLLGACPEYGCLVYEYMHNGSLEDRLFRRGNTPPISWRRRFKIAAEIATALLFLHQAKPEPLVHRDLKPANILLDRNYVSKISDVGLARLVPPSVADQVTQYHLTSAAGTFCYIDPEYQQTGQLTTKSDIYSFGIMLLQIITAKPPMGLAHHVQRAIEKERFNEMLDPTISDCPLEEAIHFAELALKCAELRKRDRPDLGTVIVPELNRLRDLGRSSDKRDGRNQFPRSAASSSSLRAQSSNEVHNLHII 739
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3959147 3962962 - Carg23947-RA Car12g00600 158216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00600 739 MobiDBLite consensus disorder prediction 180 196 - -
Car12g00600 739 ProSitePatterns Serine/Threonine protein kinases active-site signature. 551 563 IPR008271 GO:0004672|GO:0006468
Car12g00600 739 MobiDBLite consensus disorder prediction 168 261 - -
Car12g00600 739 Pfam Protein tyrosine and serine/threonine kinase 437 691 IPR001245 GO:0004672|GO:0006468
Car12g00600 739 MobiDBLite consensus disorder prediction 715 739 - -
Car12g00600 739 Pfam Universal stress protein family 19 130 IPR006016 -
Car12g00600 739 MobiDBLite consensus disorder prediction 232 261 - -
Car12g00600 739 ProSiteProfiles Protein kinase domain profile. 433 696 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car12g00600 739 Coils Coil 299 319 - -
Car12g00600 739 MobiDBLite consensus disorder prediction 702 739 - -
Car12g00600 739 Coils Coil 359 410 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car05g00359 Car12g00600 CCT
Car05g00359 Car12g00600 ECH
Car05g01319 Car12g00600 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00600 Car-Chr12:3959147 Car17g00668 Car-Chr17:6195832 0 dispersed
Car12g00600 Car-Chr12:3959147 Car05g00359 Car-Chr5:2077727 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89229 PF07714 PK_Tyr_Ser-Thr 1.80E-41 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00600 - - csv:101203326 1203.35