Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00601 ATGGAGGAAATGTTCCGAGCGGTTGTCGTGCCATTTAGTGTAGGTAATTCCGACATGGCAACTCCCATGGATATCACTAGACTCACTGCTGGTTTGTTATCTGATTCTGTGGCTAAGGCTTCTGACCACTTGACTGAAGTAGGTTCTGATGATTGTAAGAGTTCTAATGGGGAGGAAGAGGTTTCGGTTATGAACGATGACAAGTGCGAAGGAGTTTCGTTGTCGGTCGTGTTGTCTCAAAATAATAGCAATTGGGTTGCAGCTGATGAGACGATATCCCATGTAAGTGAGGAAGATGATTCTTTCTCTTTAGAGGGTATATATGATAGCTCGTGTTCGCATTCGGTAGTTAGTGAGACTAGCAGCATTTGTGGTGATGATTTTTTAGGTTCTGAGGTGTCGTATTTCGAAGCATTTGGTTCCAAGGATGTTAGCAGTGTCGAGATTGCAGCTACAGCCGATGTTGAAAGTCTCGAGACTCCGATTGCGAGTTCTTCTTCTGCAGGAGTTAGCCTTGAAGAAGATATTGGAGATGGGTTAGGCATTGATGCATGTAACATGGTTCTCCAGCTTCCTCTTGAGAAAAGAGCAAACGAACCGGTTGGTCGAAGTGTTTTCGAGGTCGATTGTATTCCTCTTTGGGGATTTACGTCCGTTTGTGGAAGAAGACCTGAAATGGAAGATGCAGCCACAGCTGTACCGAGGTTTTCAGAACTTCCTGTCCAAATGCTTATTGGCGACCGAGTTCTTGATGGCTCGAACAAGGCTATAGCTCACCAAACTGTTCATTTTTTTGGAGTCTATGATGGTCATGGTGGCTCTCAGGTCGCGAATATTTGTCACGAACGTATGCATTTGGCTTTGTCTGAGGAGATAGAACTTGCTAAGCAAGACATAGCTGCTGGCAATATGAAGGATAGTTGCCAAGAGCTATGGAGAAAGGCATTCACCAAATGTTTTCTAAAAGTTGATGCTGAAATTGGAGGGAAACCTGGCGCCGAGCCTGTTGCACCCGAAACTGTAGGATCCACTGCTGTTGTTGCAATCATCTGTGCCTCTCACATCATTGTTGCAAACTGTGGCGACTCGAGAGCAGTTCTTTGTCGTGGGAAGGAGTCTATAGCGTTGTCTGTGGATCATAAACCAAACAGAGAAGATGAATATGAAAGGATTGAAGCTGCTGGAGGAAAGGTCATACAGTGGAACGGATACCGTGTTTTTGGTGTTCTTGCAATGTCGAGATCCATCGGTGATAGATACTTGAAACCATGGATCATCCCGGAGCCAGAAGTGATGTTCCTCCCTCGAGCGAAAGACGATGAATGCCTCATTCTAGCCAGCGATGGTTTGTGGGACGTGATGACGAATGAAGAGGTATGCGACCTGGCTCGAAGACGAATCCTACTCTGGTACAAGAAGAACGGCGTCCCTTCGCCTTCTGAGAGGGGTGTGGGGATCGATCCTGCAGCCCAAGCTGCAGCCGAATACCTCTCGAACCGAGCACTTCAAAAGGGCAGCAAAGACAACATCACAGTAATTGTGATTGATTTGAAAGCTCAAAGGAAGAAGTTCAAGGCCAAATCATAA 1587 46.06 MEEMFRAVVVPFSVGNSDMATPMDITRLTAGLLSDSVAKASDHLTEVGSDDCKSSNGEEEVSVMNDDKCEGVSLSVVLSQNNSNWVAADETISHVSEEDDSFSLEGIYDSSCSHSVVSETSSICGDDFLGSEVSYFEAFGSKDVSSVEIAATADVESLETPIASSSSAGVSLEEDIGDGLGIDACNMVLQLPLEKRANEPVGRSVFEVDCIPLWGFTSVCGRRPEMEDAATAVPRFSELPVQMLIGDRVLDGSNKAIAHQTVHFFGVYDGHGGSQVANICHERMHLALSEEIELAKQDIAAGNMKDSCQELWRKAFTKCFLKVDAEIGGKPGAEPVAPETVGSTAVVAIICASHIIVANCGDSRAVLCRGKESIALSVDHKPNREDEYERIEAAGGKVIQWNGYRVFGVLAMSRSIGDRYLKPWIIPEPEVMFLPRAKDDECLILASDGLWDVMTNEEVCDLARRRILLWYKKNGVPSPSERGVGIDPAAQAAAEYLSNRALQKGSKDNITVIVIDLKAQRKKFKAKS 528
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3966077 3969546 + Carg23946-RA Car12g00601 158217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00601 528 ProSiteProfiles PPM-type phosphatase domain profile. 213 517 IPR001932 -
Car12g00601 528 ProSitePatterns PPM-type phosphatase domain signature. 264 272 IPR000222 GO:0043169
Car12g00601 528 Pfam Protein phosphatase 2C 237 510 IPR001932 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car05g00358 Car12g00601 CCT
Car05g00358 Car12g00601 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00601 Car-Chr10:3061219 Car12g00601 Car-Chr12:3966077 1.67E-87 dispersed
Car12g00601 Car-Chr12:3966077 Car14g01106 Car-Chr14:9805623 1.07E-169 dispersed
Car02g01531 Car-Chr2:9839668 Car12g00601 Car-Chr12:3966077 2.54E-21 transposed
Car12g00601 Car-Chr12:3966077 Car05g00358 Car-Chr5:2072008 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00601 K14497 - csv:101207918 881.708