Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00605 ATGGACGGAGGTGCTCCGTACAATCCACGTACTGTGGAAGAGGTGTTTAGGGATTTCAAGGGCCGGAGAGCTGGTTTAATTAAGGCTCTCACTACTGATGTTGAAGAGTTCTACCAGCAATGTGATCCTGAGAAAGAAAATCTCTGCCTTTACGGGTTTCCTAGTGAGCAGTGGGAAGTCAATTTACCAGCCGAAGAGGTGCCTCCAGAGCTTCCAGAACCTGCGCTGGGCATAAATTTTGCTAGAGACGGGATGCAAGAAAAAGACTGGCTATCCTTGGTTGCTGTGCATAGTGATGTTTGGCTGCTTTCTGTGGCATTTTATTTTGGAGCTAGGTTTGGATTTGATAAGACAGATAGGAAGCGTCTATTTAATATGATAAATGATCTTCCAACAATATTTGAAGTTGTGACAGGGACAGCCAAAAAACAAGTTAAGGATAAATCATCAGTTTCAAATCATAGCAGTAATAAATCTAAATCAAATCCAAAGCGGAGTTCTGAACCTCAAATAAAAACTACGAAGGCAGTTCAATCAAAAGATGAGGACGAGGAAGGTTTGGATGAGGAAGACGAGGAAGAACACGGTGAAACACTTTGTGGAGCTTGTGGAGAGAATTATGCATCTGATGAGTTCTGGATTTGCTGTGACATATGTGAGAAATGGTTCCATGGGAAATGTGTAAAGATCACTCCGGCAAGGGCAGAGCATATTAAGCAGTATAAATGTCCATCTTGCAGCAACAAAAGAATCCGACCCTGA 762 42.52 MDGGAPYNPRTVEEVFRDFKGRRAGLIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDRKRLFNMINDLPTIFEVVTGTAKKQVKDKSSVSNHSSNKSKSNPKRSSEPQIKTTKAVQSKDEDEEGLDEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRIRP 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4025006 4028482 + Carg23942-RA Car12g00605 158221

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00605 253 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 4 253 - -
Car12g00605 253 PANTHER CPG BINDING PROTEIN 4 253 IPR045104 GO:0006355|GO:0042393
Car12g00605 253 Pfam PHD-finger 200 249 IPR019787 -
Car12g00605 253 SMART PHD_3 199 247 IPR001965 -
Car12g00605 253 MobiDBLite consensus disorder prediction 145 174 - -
Car12g00605 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 248 IPR013083 -
Car12g00605 253 ProSitePatterns Zinc finger PHD-type signature. 200 246 IPR019786 -
Car12g00605 253 SUPERFAMILY FYVE/PHD zinc finger 189 250 IPR011011 -
Car12g00605 253 CDD PHD_AL_plant 199 249 IPR044104 -
Car12g00605 253 MobiDBLite consensus disorder prediction 145 193 - -
Car12g00605 253 ProSiteProfiles Zinc finger PHD-type profile. 197 249 IPR019787 -
Car12g00605 253 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00605 - - - csv:101208889 466.463
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car05g00354 Car12g00605 CCT
Car05g00354 Car12g00605 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g01330 Car-Chr5:12078700 Car12g00605 Car-Chr12:4025006 3.93E-114 dispersed
Car08g00668 Car-Chr8:4289205 Car12g00605 Car-Chr12:4025006 1.48E-80 dispersed
Car12g00605 Car-Chr12:4025006 Car12g01285 Car-Chr12:11936906 3.47E-133 dispersed
Car12g00605 Car-Chr12:4025006 Car05g00354 Car-Chr5:2043992 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g139 Blo01g01452 Blo12g01023 . . . Bpe02g00502 . Bma01g02201 Cmo05g00430 Cmo12g00597 . Cma05g00416 . Car12g00605 Sed08g1791 Cpe07g00574 . Bhi04g01504 Tan02g1591 Cmetu03g1113 . Hepe08g1423 . Lcy13g2215 . . . . . . . . . . . . . . . Blo17g00276 . . Bda13g01589 Bpe14g00276 . . Bma02g00545 . . . . Cma12g00657 . Car05g00354 Cpe11g00358 . . . . . . . . Cla08g00996 Cam08g1443 Cec08g1020 Cco08g1144 . . Cre08g0932 Lsi08g00842 . Chy03g00663 .
Vvi11g125 . Blo16g00972 . . . . . . . . . Cma12g00657 . Car12g00605 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo12g00597 . . . . . . Bhi06g01618 . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car16g00783 . 1 253 Alfin-like Transcription Factor Family AT1G14510 83.0 1.6e-111 399.4
Car12g00605 CCT,ECH 9 250 Alfin-like Transcription Factor Family AT1G14510 71.1 2.0e-96 349.4
Car05g00354 CCT,ECH 9 250 Alfin-like Transcription Factor Family AT1G14510 69.0 5.9e-93 337.8
Car12g01285 . 9 243 Alfin-like Transcription Factor Family AT1G14510 69.9 7.7e-93 337.4
Car04g00815 . 4 213 Alfin-like Transcription Factor Family AT1G14510 83.3 2.7e-90 328.9
Car17g00661 CST 10 249 Alfin-like Transcription Factor Family AT1G14510 66.4 1.8e-89 326.2
Car05g01330 . 9 268 Alfin-like Transcription Factor Family AT1G14510 61.0 3.2e-83 305.4
Car04g00146 . 8 238 Alfin-like Transcription Factor Family AT1G14510 59.8 4.5e-77 285.0
Car06g00201 CST 8 236 Alfin-like Transcription Factor Family AT1G14510 57.0 1.3e-71 266.9
Car08g00668 CST 10 159 Alfin-like Transcription Factor Family AT1G14510 78.0 2.3e-65 246.1
Car14g00046 CST 8 135 Alfin-like Transcription Factor Family AT1G14510 76.2 1.7e-55 213.4
Car04g01040 . 9 155 Alfin-like Transcription Factor Family AT1G14510 66.7 3.5e-53 205.7
Car05g00354 CCT,ECH 1 252 Alfin-like Transcription Factor Family AT5G26210 78.3 2.3e-108 389.0
Car12g00605 CCT,ECH 1 252 Alfin-like Transcription Factor Family AT5G26210 74.0 2.3e-108 389.0
Car12g01285 . 1 243 Alfin-like Transcription Factor Family AT5G26210 74.4 5.2e-105 377.9
Car05g01330 . 1 270 Alfin-like Transcription Factor Family AT5G26210 66.1 1.0e-97 353.6
Car17g00661 CST 1 251 Alfin-like Transcription Factor Family AT5G26210 64.2 1.3e-95 346.7
Car16g00783 . 9 255 Alfin-like Transcription Factor Family AT5G26210 73.0 2.7e-93 339.0
Car04g00146 . 5 240 Alfin-like Transcription Factor Family AT5G26210 57.4 4.4e-80 295.0
Car04g00815 . 4 215 Alfin-like Transcription Factor Family AT5G26210 73.2 8.6e-76 280.8
Car06g00201 CST 8 238 Alfin-like Transcription Factor Family AT5G26210 54.5 2.9e-71 265.8
Car08g00668 CST 1 155 Alfin-like Transcription Factor Family AT5G26210 76.1 5.1e-68 255.0
Car14g00046 CST 8 150 Alfin-like Transcription Factor Family AT5G26210 68.0 1.4e-54 210.3
Car04g01040 . 9 150 Alfin-like Transcription Factor Family AT5G26210 67.1 9.3e-54 207.6
Car12g00605 CCT,ECH 1 252 Alfin-like Transcription Factor Family AT3G42790 70.5 2.9e-100 362.1
Car05g00354 CCT,ECH 1 252 Alfin-like Transcription Factor Family AT3G42790 72.8 2.4e-99 359.0
Car12g01285 . 1 243 Alfin-like Transcription Factor Family AT3G42790 71.3 3.0e-97 352.1
Car17g00661 CST 1 251 Alfin-like Transcription Factor Family AT3G42790 61.9 2.2e-92 335.9
Car16g00783 . 3 255 Alfin-like Transcription Factor Family AT3G42790 70.0 3.5e-90 328.6
Car05g01330 . 1 270 Alfin-like Transcription Factor Family AT3G42790 61.3 8.7e-89 323.9
Car04g00146 . 6 240 Alfin-like Transcription Factor Family AT3G42790 59.2 1.5e-80 296.6
Car06g00201 CST 8 238 Alfin-like Transcription Factor Family AT3G42790 55.4 1.1e-72 270.4
Car04g00815 . 4 215 Alfin-like Transcription Factor Family AT3G42790 69.8 7.4e-72 267.7
Car08g00668 CST 1 150 Alfin-like Transcription Factor Family AT3G42790 74.2 9.7e-64 240.7
Car14g00046 CST 8 145 Alfin-like Transcription Factor Family AT3G42790 68.6 7.7e-53 204.5
Car04g01040 . 9 145 Alfin-like Transcription Factor Family AT3G42790 69.1 2.2e-52 203.0
Car04g00146 . 1 240 Alfin-like Transcription Factor Family AT5G05610 76.8 6.6e-110 394.0
Car06g00201 CST 1 239 Alfin-like Transcription Factor Family AT5G05610 70.5 2.6e-98 355.5
Car12g00605 CCT,ECH 8 252 Alfin-like Transcription Factor Family AT5G05610 66.1 4.8e-92 334.7
Car12g01285 . 8 243 Alfin-like Transcription Factor Family AT5G05610 66.1 5.5e-88 321.2
Car05g00354 CCT,ECH 8 252 Alfin-like Transcription Factor Family AT5G05610 64.1 7.1e-88 320.9
Car17g00661 CST 10 251 Alfin-like Transcription Factor Family AT5G05610 63.0 2.7e-87 318.9
Car16g00783 . 9 255 Alfin-like Transcription Factor Family AT5G05610 63.3 1.6e-84 309.7
Car05g01330 . 8 270 Alfin-like Transcription Factor Family AT5G05610 57.7 4.2e-80 295.0
Car04g01040 . 1 177 Alfin-like Transcription Factor Family AT5G05610 75.3 5.9e-74 274.6
Car04g00815 . 4 215 Alfin-like Transcription Factor Family AT5G05610 61.8 8.2e-68 254.2
Car14g00046 CST 1 157 Alfin-like Transcription Factor Family AT5G05610 75.9 1.2e-66 250.4
Car08g00668 CST 10 181 Alfin-like Transcription Factor Family AT5G05610 63.6 6.5e-57 218.0
Car04g00146 . 43 240 Alfin-like Transcription Factor Family AT3G11200 78.6 9.3e-93 337.0
Car06g00201 CST 43 239 Alfin-like Transcription Factor Family AT3G11200 72.3 1.2e-79 293.5
Car12g00605 CCT,ECH 44 252 Alfin-like Transcription Factor Family AT3G11200 64.9 3.9e-75 278.5
Car05g01330 . 59 270 Alfin-like Transcription Factor Family AT3G11200 62.4 4.3e-74 275.0
Car17g00661 CST 44 251 Alfin-like Transcription Factor Family AT3G11200 63.5 5.3e-72 268.1
Car05g00354 CCT,ECH 44 252 Alfin-like Transcription Factor Family AT3G11200 62.1 2.0e-71 266.2
Car12g01285 . 44 243 Alfin-like Transcription Factor Family AT3G11200 63.9 2.6e-71 265.8
Car16g00783 . 44 255 Alfin-like Transcription Factor Family AT3G11200 64.8 1.1e-69 260.4
Car04g00815 . 1 215 Alfin-like Transcription Factor Family AT3G11200 61.9 7.2e-69 257.7
Car04g01040 . 43 177 Alfin-like Transcription Factor Family AT3G11200 82.4 2.5e-61 232.6
Car14g00046 CST 43 157 Alfin-like Transcription Factor Family AT3G11200 81.0 1.7e-49 193.4
Car08g00668 CST 44 162 Alfin-like Transcription Factor Family AT3G11200 70.8 2.0e-42 169.9
Car16g00783 . 1 161 Alfin-like Transcription Factor Family AT2G02470 85.1 6.6e-76 281.2
Car12g00605 CCT,ECH 1 158 Alfin-like Transcription Factor Family AT2G02470 77.8 5.3e-65 245.0
Car12g01285 . 1 158 Alfin-like Transcription Factor Family AT2G02470 75.3 9.0e-65 244.2
Car05g00354 CCT,ECH 1 155 Alfin-like Transcription Factor Family AT2G02470 78.7 2.0e-64 243.0
Car08g00668 CST 10 158 Alfin-like Transcription Factor Family AT2G02470 76.5 3.2e-62 235.7
Car17g00661 CST 10 160 Alfin-like Transcription Factor Family AT2G02470 76.2 3.2e-62 235.7
Car04g00815 . 4 123 Alfin-like Transcription Factor Family AT2G02470 85.8 7.6e-56 214.5
Car05g01330 . 1 178 Alfin-like Transcription Factor Family AT2G02470 62.9 1.7e-55 213.4
Car14g00046 CST 8 165 Alfin-like Transcription Factor Family AT2G02470 66.0 5.5e-54 208.4
Car04g00146 . 8 155 Alfin-like Transcription Factor Family AT2G02470 68.2 7.9e-53 204.5
Car04g01040 . 9 155 Alfin-like Transcription Factor Family AT2G02470 68.0 7.9e-53 204.5
Car06g00201 CST 8 174 Alfin-like Transcription Factor Family AT2G02470 61.5 7.9e-53 204.5
Car12g00605 CCT,ECH 1 167 Alfin-like Transcription Factor Family AT5G20510 77.4 3.0e-73 271.9
Car12g01285 . 1 164 Alfin-like Transcription Factor Family AT5G20510 77.0 4.3e-72 268.1
Car05g00354 CCT,ECH 1 157 Alfin-like Transcription Factor Family AT5G20510 78.5 6.2e-71 264.2
Car08g00668 CST 1 162 Alfin-like Transcription Factor Family AT5G20510 76.4 3.4e-69 258.5
Car17g00661 CST 1 162 Alfin-like Transcription Factor Family AT5G20510 75.2 2.9e-68 255.4
Car16g00783 . 9 168 Alfin-like Transcription Factor Family AT5G20510 72.8 1.9e-64 242.7
Car05g01330 . 1 184 Alfin-like Transcription Factor Family AT5G20510 61.1 2.3e-57 219.2
Car04g00146 . 6 157 Alfin-like Transcription Factor Family AT5G20510 63.3 3.4e-53 205.3
Car14g00046 CST 4 170 Alfin-like Transcription Factor Family AT5G20510 59.0 2.9e-52 202.2
Car04g01040 . 7 157 Alfin-like Transcription Factor Family AT5G20510 62.4 4.2e-51 198.4
Car06g00201 CST 7 157 Alfin-like Transcription Factor Family AT5G20510 61.8 2.1e-50 196.1
Car04g00815 . 4 128 Alfin-like Transcription Factor Family AT5G20510 70.9 3.1e-46 182.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000240 6 20 6 5 4 4 8 4 4 3 3 4 4 3 3 7 4 8 7 3 3 4 4 4 5 2 5 11 7 4 159
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4435 PF12165 Alfin 2.10E-69 No_clan Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car12g00605 Car_Chr12 FPKM 3.599409 4.934545 1.089493 0.627546 1.926175 1.389317 2.193482 0.316053 0.267846 0.23562