Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00605 ATGGACGGAGGTGCTCCGTACAATCCACGTACTGTGGAAGAGGTGTTTAGGGATTTCAAGGGCCGGAGAGCTGGTTTAATTAAGGCTCTCACTACTGATGTTGAAGAGTTCTACCAGCAATGTGATCCTGAGAAAGAAAATCTCTGCCTTTACGGGTTTCCTAGTGAGCAGTGGGAAGTCAATTTACCAGCCGAAGAGGTGCCTCCAGAGCTTCCAGAACCTGCGCTGGGCATAAATTTTGCTAGAGACGGGATGCAAGAAAAAGACTGGCTATCCTTGGTTGCTGTGCATAGTGATGTTTGGCTGCTTTCTGTGGCATTTTATTTTGGAGCTAGGTTTGGATTTGATAAGACAGATAGGAAGCGTCTATTTAATATGATAAATGATCTTCCAACAATATTTGAAGTTGTGACAGGGACAGCCAAAAAACAAGTTAAGGATAAATCATCAGTTTCAAATCATAGCAGTAATAAATCTAAATCAAATCCAAAGCGGAGTTCTGAACCTCAAATAAAAACTACGAAGGCAGTTCAATCAAAAGATGAGGACGAGGAAGGTTTGGATGAGGAAGACGAGGAAGAACACGGTGAAACACTTTGTGGAGCTTGTGGAGAGAATTATGCATCTGATGAGTTCTGGATTTGCTGTGACATATGTGAGAAATGGTTCCATGGGAAATGTGTAAAGATCACTCCGGCAAGGGCAGAGCATATTAAGCAGTATAAATGTCCATCTTGCAGCAACAAAAGAATCCGACCCTGA 762 42.52 MDGGAPYNPRTVEEVFRDFKGRRAGLIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDRKRLFNMINDLPTIFEVVTGTAKKQVKDKSSVSNHSSNKSKSNPKRSSEPQIKTTKAVQSKDEDEEGLDEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRIRP 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4025006 4028482 + Carg23942-RA Car12g00605 158221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00605 253 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 4 253 - -
Car12g00605 253 PANTHER CPG BINDING PROTEIN 4 253 IPR045104 GO:0006355|GO:0042393
Car12g00605 253 Pfam PHD-finger 200 249 IPR019787 -
Car12g00605 253 SMART PHD_3 199 247 IPR001965 -
Car12g00605 253 MobiDBLite consensus disorder prediction 145 174 - -
Car12g00605 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 248 IPR013083 -
Car12g00605 253 ProSitePatterns Zinc finger PHD-type signature. 200 246 IPR019786 -
Car12g00605 253 SUPERFAMILY FYVE/PHD zinc finger 189 250 IPR011011 -
Car12g00605 253 CDD PHD_AL_plant 199 249 IPR044104 -
Car12g00605 253 MobiDBLite consensus disorder prediction 145 193 - -
Car12g00605 253 ProSiteProfiles Zinc finger PHD-type profile. 197 249 IPR019787 -
Car12g00605 253 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car05g00354 Car12g00605 CCT
Car05g00354 Car12g00605 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g01330 Car-Chr5:12078700 Car12g00605 Car-Chr12:4025006 3.93E-114 dispersed
Car08g00668 Car-Chr8:4289205 Car12g00605 Car-Chr12:4025006 1.48E-80 dispersed
Car12g00605 Car-Chr12:4025006 Car12g01285 Car-Chr12:11936906 3.47E-133 dispersed
Car12g00605 Car-Chr12:4025006 Car05g00354 Car-Chr5:2043992 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4435 PF12165 Alfin 2.10E-69 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00605 - - csv:101208889 466.463