Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00609 ATGGAAACTGGATCACAAATATCAGGCCTTCCCAGTTATCAACTTCAACTCTCCTTCCACCTCTCAAATGCACCTCCTCTTCCCCAACCCATCCACCAAATGGGATTCGTTCACGTCCAAGACCACACCCAGGTTTTGAGCTTCTTGTCACCCAATACCGCCGCCACCGCCACCATGCCACCTGCCTTTACAACTTCTGCTCACGCCCATCTCGTTAGTAGACCTTCTTGGAGCAACGAGCAGGTGGGAACACAGGATCCGAAGCCCGGCAACGACGAGAACTGCAATGGTAGCGCTAGCGACGGCAGCAATTCATGGTGGAGAAACACAAATGCAGATAAGAGTAAAGTGAAGGTGAGGAGAAAGCTGAGAGAGCCGCGTTTCTGTTTCCAGACCAGAAGCGATGTAGATGTGCTCGACGATGGCTATAAATGGAGAAAATATGGCCAGAAAGTCGTCAAGAACAGCCTTCATCCTAGAAGCTACTACCGTTGCACGCATAGCAACTGCCGAGTGAAGAAGAGGGTGGAGCGACTGTCGGAAGATTGCCGGATGGTGATAACCACGTACGAAGGTAGACACAACCACTCCCCTTGCGACGACTCCAATTCTTCGGAGCACGAGCCCTTTACATCCTTTTGA 642 51.25 METGSQISGLPSYQLQLSFHLSNAPPLPQPIHQMGFVHVQDHTQVLSFLSPNTAATATMPPAFTTSAHAHLVSRPSWSNEQVGTQDPKPGNDENCNGSASDGSNSWWRNTNADKSKVKVRRKLREPRFCFQTRSDVDVLDDGYKWRKYGQKVVKNSLHPRSYYRCTHSNCRVKKRVERLSEDCRMVITTYEGRHNHSPCDDSNSSEHEPFTSF 213
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4142433 4143711 - Carg17693-RA Car12g00609 158225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00609 213 MobiDBLite consensus disorder prediction 74 111 - -
Car12g00609 213 Pfam WRKY DNA -binding domain 140 196 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car12g00609 213 MobiDBLite consensus disorder prediction 194 213 - -
Car12g00609 213 ProSiteProfiles WRKY domain profile. 134 196 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00779 Car-Chr6:6012452 Car12g00609 Car-Chr12:4142433 2.53E-131 dispersed
Car12g00609 Car-Chr12:4142433 Car20g00950 Car-Chr20:10898379 1.30E-47 dispersed
Car12g00609 Car-Chr12:4142433 Car03g00946 Car-Chr3:7357790 1.62E-49 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4436 PF03106 WRKY 1.30E-24 CL0274 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00609 - - cmax:111472906 363.614