Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00621 ATGTACCAATCCTATGATCCCGATTGGTCCCCGGCCATCGCCACCTGGTACGGTACCCCCAATGGTGCCGGGAGCGATGGAGGTTCCTGTGGGTATGGAAAAGCGGTCGAGGAACCACCATTTTCGTCGTTAATCGCCGCAGGTGGCCCTTCTTTGTACAAATCCGGCAAAGCCTGTGGAGCTTGTTATCAGGTGAAGTGCTCCGGAGAAGGCGCATGTTCAGGGAGTCCGGTGACGGTGGTTATAACTGATAGTTGTCCGGGCGGCTCCTGTGCTTCCGACTCTGTCCACTTCGACCTCAGTGGCACTGCTTTTGGTGCTATGGCTGCTACTGGGCGGGCCGATGAACTCCGCAGTCTCGGCGTTTTGCACATTCAACACAAGAGGGTGGAATGCAATTACCCGGGAACCTCGATCAACTTCATCGTGGACTCAGGGTCGAACCCAAACTACTTCGCAGTTCTGATCGAATACGAAGATGGAGATGGAGAGCTAGGTTTAGTGGAGCTGAAACCGGCGCTCAACTCGTACTCATGGATTCCAATGAAGCAGTCATGGGGTGCAGTTTGGAAGCTGGACTCTGCCTCTGCGCTTCAACCTCCCTTCTCCCTCAGGCTCACTGCCCTCGACTCCGGCAAGACCGTGGTGGCTAACAACGTAATTCCGGTCGGGTGGCAGCCCGGACAGACTTATAGATCAGTGGTCAACTTCGATACATGA 720 55.0 MYQSYDPDWSPAIATWYGTPNGAGSDGGSCGYGKAVEEPPFSSLIAAGGPSLYKSGKACGACYQVKCSGEGACSGSPVTVVITDSCPGGSCASDSVHFDLSGTAFGAMAATGRADELRSLGVLHIQHKRVECNYPGTSINFIVDSGSNPNYFAVLIEYEDGDGELGLVELKPALNSYSWIPMKQSWGAVWKLDSASALQPPFSLRLTALDSGKTVVANNVIPVGWQPGQTYRSVVNFDT 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4215542 4216610 - Carg17681-RA Car12g00621 158237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00621 239 Pfam Expansin C-terminal domain 139 222 IPR007117 -
Car12g00621 239 Pfam Lytic transglycolase 46 123 IPR009009 -
Car12g00621 239 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 27 137 IPR007112 -
Car12g00621 239 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 150 233 IPR007117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g01561 Car-Chr11:12429556 Car12g00621 Car-Chr12:4215542 1.32E-56 dispersed
Car12g00621 Car-Chr12:4215542 Car20g00166 Car-Chr20:913776 7.39E-77 dispersed
Car19g00316 Car-Chr19:4949367 Car12g00621 Car-Chr12:4215542 6.57E-29 dispersed
Car12g00621 Car-Chr12:4215542 Car06g00807 Car-Chr6:6226708 1.56E-136 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00621 - - csv:101219528 436.802