Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00635 ATGGGCGGGAGAGATGACGAGTTGCGGCTGACTTTGAGTTTAGGGTTGGGAGTTACGACTCGGCCTTCTTTTCAGCCGACTCACATTCACAGGCCATCGAACTCCATGCATAATCACATCCGCAATGGTTCTTGGAATGAGCTCTTTCAATTTTCTGATCGAAATGCCGATTCTAGGTCGTTTCTTAGGGGAATCGACGTGAATCGGCTGCCGACTGTCGTGGACGGCGAGGAAGAGAACGGCGTTTCATCTCCGAACAGTACCGTTTCTAGCATCAGTGGAAAGAGGAGCGAGAGAGAAGCCGAGGCGGAGGCGGAGGCGGAGGCTGAGGCCGAGAGAGCCTCGTGCTCGCAAGGGAGCGACGATGAAGACGGCGGAGGCGGCGACGCCTCGAGAAAGAAGCTGAGGCTATCAAAGGAGCAGTCGATGGTTCTTGAGGAGACCTTCAAAGAGCACAATACTCTCAATCCAAAGCAAAAGCTGGCACTTGCAAAGCAGCTGAATCTGAGACCAAGACAAGTGGAGGTGTGGTTTCAAAACAGAAGGGCAAGGACGAAACTGAAGCAGACAGAAGTGGATTGCGAGTACTTGAAGAGGTGCTGCGAGAATCTAACAGGGGAGAACAGAAGGCTGCAGAAGGAGGTGCAGGAGTTGAGAGCGCTCAAGCTTTCTCCACAGCTCTATATGCACATGAATCCTCCTACCACCCTCACCATGTGTCCTCAGTGTGAGCGTGTGGCAGTTTCCTCATCTTCTTCCACCACCTGCCATCCAGCAGCGGCTGCTGGTGTACAGCGTCCCTCCATGCCCATCAACCCATGGGCGGCGGTGTTGCCGATTGAACGTTGA 849 53.83 MGGRDDELRLTLSLGLGVTTRPSFQPTHIHRPSNSMHNHIRNGSWNELFQFSDRNADSRSFLRGIDVNRLPTVVDGEEENGVSSPNSTVSSISGKRSEREAEAEAEAEAEAERASCSQGSDDEDGGGGDASRKKLRLSKEQSMVLEETFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTGENRRLQKEVQELRALKLSPQLYMHMNPPTTLTMCPQCERVAVSSSSSTTCHPAAAAGVQRPSMPINPWAAVLPIER 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4282596 4284243 + Carg17667-RA Car12g00635 158251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00635 282 Pfam Homeodomain 132 186 IPR001356 GO:0003677
Car12g00635 282 Pfam Homeobox associated leucine zipper 188 222 IPR003106 GO:0006355|GO:0043565
Car12g00635 282 MobiDBLite consensus disorder prediction 95 133 - -
Car12g00635 282 Coils Coil 201 221 - -
Car12g00635 282 ProSitePatterns 'Homeobox' domain signature. 163 186 IPR017970 GO:0000981|GO:0006355
Car12g00635 282 MobiDBLite consensus disorder prediction 79 94 - -
Car12g00635 282 MobiDBLite consensus disorder prediction 76 133 - -
Car12g00635 282 Pfam HD-ZIP protein N terminus 1 100 IPR006712 GO:0005634
Car12g00635 282 ProSiteProfiles 'Homeobox' domain profile. 128 188 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00970 Car-Chr5:9261036 Car12g00635 Car-Chr12:4282596 1.35E-80 dispersed
Car12g00635 Car-Chr12:4282596 Car16g01059 Car-Chr16:9103007 1.76E-106 dispersed
Car12g00635 Car-Chr12:4282596 Car06g00825 Car-Chr6:6386012 4.84E-117 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4443 PF04618 HD-ZIP_N 4.80E-29 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00635 K09338 - csv:101222132 421.394