Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00643 ATGAACGTGAAAACTCCGGCGACGAGGACTCGTGTTGGGAAGTACGAGCTAGGCAAAACCCTCGGCGAAGGCACTTTTGCTAAGGTCAAGTTCGCGAAGAATGTTGAGAATGGTGATTATGTCGCCATCAAGATTCTCGACCGGGAGCAAGTTCTTCGCCACAAGATGGTCGAACAGATTAAAAGAGAGATATCGACTCTGAAAGTTATCAAGCATCCGAACGTTGCTAAGATTTATGAGGTTATGGCAAGCAAATCAAAAATCTACATTGTTCTTGAGTTTGTGGATGGAGGCGAGCTTTTTGACAAAATAGCCGCAAAGGGAAGGCTCAAAGAGGATGAGGCAAGGAAATATTTCCAGCAACTTATTAATGCTGTAGATTACTGCCATAGTAGAGGAGTGTACCATCGAGATCTGAAGCCTGAAAATCTTCTTTTAGATTCACATGATGTTCTTAAGGTGTCAGATTTTGGATTGAGTGCATTTTCACAGCAAGTACGAGGGGATGGTCTTCTTCACACTGCCTGTGGGACCCCAAACTATGTAGCTCCCGAGGTCTTCAACGATAAAGGTTATGATGGTACATCATCTGATATTTGGTCATGCGGGGTCATTCTCTTTGTTCTTATGGCTGGCTTCTTGCCTTTTGACGAGCCAAATCTGATGTGTTTGTATACAAAAATTTCGAAGGCTGATTTCTGCTTTCCATCATGGTTCTCAAATGGCGCTAAAAAACTTGTTCGCCGCATTCTTGATCCCCACCCTCTTACTCGAATAACGATAGCCGAAATTCAAGAAGATGCATGGTTCAAGAAGGGCTACACACCTGCTCAATTTGAAGTGGAAGAGGATATAACTCTCGATGATGTAGATGCCGCTTTTAGCAGCTCGAGGGAACATCTTGTGACAGAAAGAAAAGAGAAGCCAATGTCCATGAACGCTTTTGAGCTCATCTCTAGGTCACCTGGTTTCAGTCTTGAAAATCTATTTGAGAAGCAGAAGACTGTTACAAAGAGAGAAACCCGTTTTACCTCGCAAAGTCCTGCAAACGAGATCATGTCGAAGATTGAAGAAACGGCGAAACCAATGGGGTTCAATGTACGAAAACGGGACTACAAGATGAAGTTACAAGGTGACAAGACTGGGAGGAAAGGACACCTCTCCATAGCTACTGAGGTGTTTGAGGTGGCACCTTCCTTGCATATGGTGGAGCTTCGGAAGACGAGTGGCGATACGCTCGAGTTTCACAAGTTCTACAAAAGTTTCTCTTCAGGATTGAAAGACATTGTGTGGAGAACTGATGAAAATACTGTTGAAGGGAGCTGA 1326 43.89 MNVKTPATRTRVGKYELGKTLGEGTFAKVKFAKNVENGDYVAIKILDREQVLRHKMVEQIKREISTLKVIKHPNVAKIYEVMASKSKIYIVLEFVDGGELFDKIAAKGRLKEDEARKYFQQLINAVDYCHSRGVYHRDLKPENLLLDSHDVLKVSDFGLSAFSQQVRGDGLLHTACGTPNYVAPEVFNDKGYDGTSSDIWSCGVILFVLMAGFLPFDEPNLMCLYTKISKADFCFPSWFSNGAKKLVRRILDPHPLTRITIAEIQEDAWFKKGYTPAQFEVEEDITLDDVDAAFSSSREHLVTERKEKPMSMNAFELISRSPGFSLENLFEKQKTVTKRETRFTSQSPANEIMSKIEETAKPMGFNVRKRDYKMKLQGDKTGRKGHLSIATEVFEVAPSLHMVELRKTSGDTLEFHKFYKSFSSGLKDIVWRTDENTVEGS 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4319502 4325056 - Carg17659-RA Car12g00643 158259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00643 441 SUPERFAMILY Protein kinase-like (PK-like) 12 307 IPR011009 -
Car12g00643 441 ProSiteProfiles NAF domain profile. 307 331 IPR018451 GO:0007165
Car12g00643 441 Gene3D Phosphorylase Kinase; domain 1 4 94 - -
Car12g00643 441 CDD STKc_SnRK3 14 269 - -
Car12g00643 441 Pfam NAF domain 309 369 IPR004041 GO:0007165
Car12g00643 441 ProSiteProfiles Protein kinase domain profile. 15 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car12g00643 441 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Car12g00643 441 Gene3D Transferase(Phosphotransferase) domain 1 95 276 - -
Car12g00643 441 SMART serkin_6 15 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car12g00643 441 Gene3D Kinase associated domain 1, KA1 306 432 - -
Car12g00643 441 ProSitePatterns Serine/Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672|GO:0006468
Car12g00643 441 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 3 7 434 - -
Car12g00643 441 CDD CIPK_C 313 428 - -
Car12g00643 441 Pfam Protein kinase domain 15 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car12g00643 441 PANTHER - 7 434 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00982 Car-Chr2:6959053 Car12g00643 Car-Chr12:4319502 0 dispersed
Car03g01283 Car-Chr3:9792705 Car12g00643 Car-Chr12:4319502 0 dispersed
Car12g00643 Car-Chr12:4319502 Car13g00407 Car-Chr13:6590710 0 dispersed
Car12g00643 Car-Chr12:4319502 Car06g00831 Car-Chr6:6542016 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89231 PF00069 Pkinase 9.00E-70 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00643 - - csv:101203531 836.639