Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00644 ATGGCGATCCAATTTAAGTTCAGGAGCTCGGTGATCTTCGACTCGGTGGATATCGATGGCCGACCCTCCATATCAATTGGCGATCTTAAATCCAAAATTATTCGGATGAAGAACCTCGATACCTGCCAAAACTTTGATCTCGTTTTCTCCGATGCCCGTACCGGCCAAGATTTGGTTGACGAGAAATTTGAAATTCCTAGTGGTTCATGCGTGATCATAAAGAGAGTTCCTGCGGGATCAGTTCCTTCCAATGTTGTACATCACGACTTGTTTGGGAAATTTCAAGTCAAAGACACTGACATGGTTAATTCATCTCGTCCAGTGAAGGCTGAGACGGACAATTTTGATGATTTTGGTGTAGACTTATACCCTATTCGCAAAAAAACATCATCAATTTCTCTCCATCATAAAAAATATGATGCTGTTAGACATTATAAGGAGACCGAAAGAGGATATATTGAGCCTGAAAGAAGTGGCATTAGTGAGGCTATTCAAAGAGATTCAAGTCATGGTACAACAATTGGAGGAACTGAGCTGCAAACAAACATAAAAGTTCATATTGGCGAGGGAATTGGTTTGGAGAAACCAGTTGTTGCAATGGCTTCAGTGAATCATGATTGTGAAACACCGCCAGAACTGAAGTGTACTCTTTGCAAATCACTCTTTGTGGATGCCGTTATTATTGGTTGCTGTAAGCATAGCTTTTGTGAGAAATGCATTCATCATGTTCTACTGCGGAAGGCAAAGTGCCCTAATTGTGCCTCTACTAAAAGTAGACTAGAAGATTTGTTGCCGAATTTATCTCTTAGGCAAAATGTTGCTGATTTCCTTGAGTCTCAGATCCTGATGGGCAACCCAGACAATGCCATTCATCATGATGCACCAGATGAAGAATCAAGAATTGAAGGAGAGGACATGCCATTTCTGTCTTATGCTACCAGTAGGGGTTGTAATCAAGAAGTGGAGGAAGACATCAATGACTCATCATTAAAAAGAAATATGGTTGATGGAGCACTATTTGGATCGGGCCACCCTGAAAAATTTGGTGGTATGCCACAAGACCTTCCTCCTTTTGATGATTGCCAAGGGGAAAGTCAGCCTGTTTTTGGGGATTTTAAGCATGGGTTGCTGATCAACGCCTCTGATATACCGGGAAAAATCCAAAACCTTGCAGATTTTAGAAGACAAAAAAAGCGTTGCCGTGCTTGTTACATGTGTGGTTCTCTGGACCATCTCATTAGAGACTGTCCAGTTGCTTCAAAGCCACATCCCATGCCTCTAATGGGAGCTACGCCATATTATGCATCACCTTGGCATCATGTCAGTTCCTTTTCAAACCTGTATGGTTGTACCATGCCTTTCAATACATCAACGGTACCTGAAGCAAATTCTTACTGGGCATCTCTTTATGGTGGATATCCAGCCCCAAGTGGATATGTGGGCATGAGAGACATGACTGCTCCACCACTCCGGAAGATTGAAGAGTTCTGCGGTGGTTATTCACAATCCATAGACGTCAGTGACACTAATAAAAGAGGGATGATACCTGATAATCGTACCAGTAGGGCAATGACTTTCATCAATGAGGATGGGTGCGAGGGAGAAGATAATGTTGCTAAGAATAGAGGTCTACATGAGTGGGATGGAAGATCAAGAGACTATAGAATGCTCGAAGAAAAGGAACACCCGCATCGAGAAACTGCCAACGACGAAATAAATTGGCTGTATGACGAAAAAAGGAAGAGTTCCCGTTCTTCTAAAGATGCTATGATCAATCAATTCAACGGGAGATTTGGCCTGGACACAGAAGGCTTGCCTTGCAACACCAAATTACTGACTAAGGAGAGGTCTGAACATCACCATAGAAGCTTCCGGGAGGTTGGTGGGAGGACAGATGAATGTTGCAGTCATTTTAGCTCGAATCACCACAAAAAATGCAAATTGAAAGAAGATAAAACCAATATGGTCGAGTTCGACTTAAAGCGACAAACAAAGAAGCATCCTACCGACTCAAAGTTTGATTTAGAACAAAGCTTTCCCAGATCAAGAGGTTACTTATCGAGAGGTTCTAAGCACAATGCACTCACTCAAGATCATCATCGGCAAATGGTTTGCGAGCCAAACGATAATCGTGTCCATAAATATAAACAAAGAAGGCAGTGA 2163 42.3 MAIQFKFRSSVIFDSVDIDGRPSISIGDLKSKIIRMKNLDTCQNFDLVFSDARTGQDLVDEKFEIPSGSCVIIKRVPAGSVPSNVVHHDLFGKFQVKDTDMVNSSRPVKAETDNFDDFGVDLYPIRKKTSSISLHHKKYDAVRHYKETERGYIEPERSGISEAIQRDSSHGTTIGGTELQTNIKVHIGEGIGLEKPVVAMASVNHDCETPPELKCTLCKSLFVDAVIIGCCKHSFCEKCIHHVLLRKAKCPNCASTKSRLEDLLPNLSLRQNVADFLESQILMGNPDNAIHHDAPDEESRIEGEDMPFLSYATSRGCNQEVEEDINDSSLKRNMVDGALFGSGHPEKFGGMPQDLPPFDDCQGESQPVFGDFKHGLLINASDIPGKIQNLADFRRQKKRCRACYMCGSLDHLIRDCPVASKPHPMPLMGATPYYASPWHHVSSFSNLYGCTMPFNTSTVPEANSYWASLYGGYPAPSGYVGMRDMTAPPLRKIEEFCGGYSQSIDVSDTNKRGMIPDNRTSRAMTFINEDGCEGEDNVAKNRGLHEWDGRSRDYRMLEEKEHPHRETANDEINWLYDEKRKSSRSSKDAMINQFNGRFGLDTEGLPCNTKLLTKERSEHHHRSFREVGGRTDECCSHFSSNHHKKCKLKEDKTNMVEFDLKRQTKKHPTDSKFDLEQSFPRSRGYLSRGSKHNALTQDHHRQMVCEPNDNRVHKYKQRRQ 720
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4340338 4347958 + Carg17658-RA Car12g00644 158260

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00644 720 Pfam Zinc finger, C3HC4 type (RING finger) 214 253 - -
Car12g00644 720 Pfam Zinc knuckle 401 417 IPR001878 GO:0003676|GO:0008270
Car12g00644 720 ProSiteProfiles DWNN domain profile. 3 77 IPR014891 GO:0008270
Car12g00644 720 ProSiteProfiles Zinc finger RING-type profile. 215 253 IPR001841 -
Car12g00644 720 Pfam DWNN domain 3 77 IPR014891 GO:0008270
Car12g00644 720 MobiDBLite consensus disorder prediction 679 699 - -
Car12g00644 720 ProSitePatterns Zinc finger RING-type signature. 231 240 IPR017907 -
Car12g00644 720 ProSiteProfiles Zinc finger CCHC-type profile. 403 417 IPR001878 GO:0003676|GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00644 - - - bhj:120075688 1041.95
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00644 Car-Chr12:4340338 Car16g01065 Car-Chr16:9157768 4.19E-12 dispersed
Car12g00644 Car-Chr12:4340338 Car06g00707 Car-Chr6:4326591 3.43E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g150 . . . . . . . . . Cmo12g00602 . . . Car12g00644 . Cpe07g00577 . Bhi04g01513 Tan02g1585 . . Hepe08g1435 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma12g00661 . . . . . . . . . . . Cla08g00988 . . . . . . Lsi08g00832 . Chy03g00656 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010055 0 4 0 0 0 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 4 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car12g00644 Car_Chr12 FPKM 0.0 2.872392 4.991553 5.765393 1.960979 1.751043 2.2334 3.137653 3.878785 5.001401