Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00659 ATGGATACACCAATGCCGAGCTATCGAATCCGTGAAATGGCTAAACATCTGTTTGGAGATCACTGTATACAAGTCGCCGAACAAGCCATGAGGAGATGCTTACACCTACGTCAGCCGAAAGCAGCTTGTCAAAAGACACATATCAATTCATTTCAGCGTGTGGACCACGAAGCTACTCGGGATGTTCCAAGAATGGAAAATACGAGTTACGATATCAATAGTACAAACGTTTCTCTCGTTTTGCAACTCTCCTCCCAACGCCACGCCTCCACCACGCCCCGGAATCTCAAAGTCTACACCTTGTCGGAGTTGAAGACGGCCACCAGGAATTTCCGGCCCGACACCATGCTGGGGGAGGGCGGATTTGGGAGAGTCTTCAAAGGCTGGGTCGATGAGACAACCTACGCGCCGTCCAAGGTCGGCGTCGGAATTCCTGTTGCCGTGAAAAAGTCAAACCCCGACAGCTCTCAGGGTCTTCGCGAATGGAAGGCGGAAGTGGATTTTCTGGGGAAATTTAGCCATCCAAATGTGGTGAAATTGATCGGATATTGCTGGGAAGAGAAGCAATTTCTACTTGTTTATGAACACATGCAGAGAGGAAGCTTGGAAAATCACTTATTTCGAAAAGGTGTAGAGCCTCTTTCATGGGAAACAAGGATCAAAATAGCCACAGGGGCGGCGCGTGGTTTAACGTTCCTCCACACGTCGGAGAAGAGCGTGATTTACCGCGACTTCAAGGCGTCGAATATTCTTCTGGATGGGGATTTCCACGCAAAGCTGTCAGATTTTGGGCTTGCAAAATTCGGCCCATCTAATGGCGACACCCACGTCAGCACAAATCCAGTTGGCACTTACGGATACGCTGCACCCGAGTACATTGCAACTGGACATTTGTACATAAAGAGTGACGTGTATGGGTTCGGTGTGGTGCTGCTTGAGCTGCTAACTGGGCTGCGAGCAGTGGACCCAAACCGGCCCAGTCGGTCTCACAACTTGGTGGAGTGGGCCGAGCCGTCTCTGGCCCACAAGAAGAAGATAAAGAAGCTAATGGACCCAAGGCTTGGGGACGACTACTCGCCGAAAGGAGCCTGGGCCTTAGCCGAACTCATTTTGAAATGTTTGGAGCAGAACCCTAGAAACCGGCCCTCCATGGAACAGGTCTTGGAGATTCTGGAGAAAGTTAGTACCCTTAAAGATAGGCCCAAGGAGCCCAAATCAAGGGCTAGGACGCCCACCCATTATTAG 1245 50.6 MDTPMPSYRIREMAKHLFGDHCIQVAEQAMRRCLHLRQPKAACQKTHINSFQRVDHEATRDVPRMENTSYDINSTNVSLVLQLSSQRHASTTPRNLKVYTLSELKTATRNFRPDTMLGEGGFGRVFKGWVDETTYAPSKVGVGIPVAVKKSNPDSSQGLREWKAEVDFLGKFSHPNVVKLIGYCWEEKQFLLVYEHMQRGSLENHLFRKGVEPLSWETRIKIATGAARGLTFLHTSEKSVIYRDFKASNILLDGDFHAKLSDFGLAKFGPSNGDTHVSTNPVGTYGYAAPEYIATGHLYIKSDVYGFGVVLLELLTGLRAVDPNRPSRSHNLVEWAEPSLAHKKKIKKLMDPRLGDDYSPKGAWALAELILKCLEQNPRNRPSMEQVLEILEKVSTLKDRPKEPKSRARTPTHY 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4446374 4455700 - Carg17643-RA Car12g00659 158275

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00659 414 ProSitePatterns Protein kinases ATP-binding region signature. 117 150 IPR017441 GO:0005524
Car12g00659 414 Pfam Protein tyrosine and serine/threonine kinase 115 391 IPR001245 GO:0004672|GO:0006468
Car12g00659 414 ProSiteProfiles Protein kinase domain profile. 111 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car12g00659 414 ProSitePatterns Serine/Threonine protein kinases active-site signature. 240 252 IPR008271 GO:0004672|GO:0006468
Car12g00659 414 Coils Coil 413 414 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00659 - - - csv:101216893 612.838
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car05g00857 Car12g00659 CCT
Car05g00857 Car12g00659 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00659 Car-Chr12:4446374 Car16g01205 Car-Chr16:10169819 9.43E-150 dispersed
Car12g00659 Car-Chr12:4446374 Car05g00857 Car-Chr5:8427923 3.33E-78 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g92 . . . . . . . . . Cmo12g00617 . . . Car12g00659 . . Cpe07g00590 . . . . . . . . . . . . . . . . Cone17ag1455 . . . . . Blo17g00905 . . . . . . . . . . Cma12g00679 . Car05g00857 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004298 1 1 1 0 0 0 1 1 1 1 1 0 2 1 0 2 1 0 3 1 1 0 0 0 0 2 0 0 0 2 23
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89233 PF07714 PK_Tyr_Ser-Thr 8.60E-47 CL0016 Car PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car12g00659 Car_Chr12 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0