Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00671 ATGATCCCTTTTAGAGCCTTGTTTCTTTGTTCCTTGTTGTTTGTGGTCGTATATTCCGATGCTCCTCCGGATGGCGATAAGACACCTGATGTTGAAGTTGATAAGATAAACGTTACCGATACCGATACGGATAAAGGAATCGATGTTGAAAAGGCTGATGAATATTGGCAAAAACGAGCTGCTGAAGCTCAAAAGGCTGCTCAAAAGGCCTTCAATCCTGACCCTGATTCGGTTGCTGATAACTTCAACGCAGCCGTTGGCCAGGAGATAGTGAACAGCAACAATTCAAGGAGGAGCTTGAGGAGATACAGAGGTCCATGCTTGGCGACCAACCCCATTGACAGATGCTGGAGGTGCGACCCAAATTGGGACAAGAATCGAAAAAAGCTAGCCGAATGTCCATTAGGGTTCGGCCACCAAACCATCGGCGGCAAGAGAGGTCCCATTTACGTGGTGACAGACGCCTCCGATGAAAACCTAGTCGACCCCAAGCCTGGAACCCTACGCCACGCGGTTGTCCAAAACGGCCCAAGATGGATCATATTCGGGCGCAGCATGATCATCAGGCTGTCCCAAGAGCTCATAATCTCAAGCAACAAGACCATCGACGCCCGCGGCTTCAATGTCCACATAGCCTTCGGCGCAGGGCTCACTCTTCAATTCGTGCATAATATCATCATCCATGGCCTTCATATCCATGACATTATTTCCAAATCTGGTGGAATGATTAGAGATGCATTTGATCATTATGGGTTCCGAACACAAAGCGATGGCGATGGTATTTCAATCTTTGGAGGCTCTCACATTTGGATCGATCATGTTTCAATGTACAATTGCCAAGACGGGTTAATTGATGCCATTATGGGTTCCACTGCCATTACAATTTCCAATAGTCATTTTACTCACCATAACGAGGTTATGTTATTTGGAGCCAGTGATAGCTACAAGGAAGATTCTATAATGCAAATAACCCTCGCATTCAACCATTTTGGGAGGGGATTGGTGCAAAGAATGCCAAGGTGTAGATTTGGGTTCTTCCATGTGGTTAATAATGACTATACTCATTGGCTTATGTATGCCATTGGGGGCAGCCAGCACCCCACCATTGTTAGCCAAGGGAACCGTTTCATAGCCCCTCCGAACCCAAGCGCGAAACAGATAACGAAGAGAGAGTATGCCGATGAGTCCGAATGGAAGAATTGGTCATGGCGGTCGGAGGGAGATTTGATGATCAATGGGGCGTACTTTGTTCCGGCAGGGGATCAAACCAAGGGGAAGAAGAGCGATTTCTCAAGATATGATATGATTAAATTCAAGCCAGGAGCCTACGTGAAAAGGCTTACACGCTTCGCTGGTACACTTGAGTGTCAAGTAGGCAAGCCATGCTAA 1389 46.94 MIPFRALFLCSLLFVVVYSDAPPDGDKTPDVEVDKINVTDTDTDKGIDVEKADEYWQKRAAEAQKAAQKAFNPDPDSVADNFNAAVGQEIVNSNNSRRSLRRYRGPCLATNPIDRCWRCDPNWDKNRKKLAECPLGFGHQTIGGKRGPIYVVTDASDENLVDPKPGTLRHAVVQNGPRWIIFGRSMIIRLSQELIISSNKTIDARGFNVHIAFGAGLTLQFVHNIIIHGLHIHDIISKSGGMIRDAFDHYGFRTQSDGDGISIFGGSHIWIDHVSMYNCQDGLIDAIMGSTAITISNSHFTHHNEVMLFGASDSYKEDSIMQITLAFNHFGRGLVQRMPRCRFGFFHVVNNDYTHWLMYAIGGSQHPTIVSQGNRFIAPPNPSAKQITKREYADESEWKNWSWRSEGDLMINGAYFVPAGDQTKGKKSDFSRYDMIKFKPGAYVKRLTRFAGTLECQVGKPC 462
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
12 4585982 4587850 + Carg17631-RA Car12g00671 158287
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Car12g00671 462 Pfam Pectate lyase, N terminus 50 100 IPR007524 GO:0030570
Car12g00671 462 Pfam Pectate lyase 197 376 IPR002022 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01674 Car-Chr4:9637243 Car12g00671 Car-Chr12:4585982 0 dispersed
Car11g00874 Car-Chr11:5436999 Car12g00671 Car-Chr12:4585982 0 dispersed
Car12g00671 Car-Chr12:4585982 Car14g00546 Car-Chr14:2999530 0 dispersed
Car12g00671 Car-Chr12:4585982 Car05g00827 Car-Chr5:8166679 0 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00671 K01728 - csv:101217922 709.523