Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00674 ATGGATCCACCTACTCTGATGAACCAAGGGTCATTTCCTAATGACGCTAATGCCAATGCGAATGCGACGGCGTACAATCTCTCCGAGATCTGGCAGTTCCCAATTAATGGCGGAACTGGCGTTGAGGAATCTGGAGGTGGGCTTGGATTGAGGATGGCTCAGTTTGCTCATAATTTGGGGCAGTTTGGAGAGATTTCCATGGAGAATCCAGAAGTTTCGCGCGGTGATCCAGTGAGTCAGAGAGTAGTAGGTCATGGCCATGGCGGTTCCAAGAAGCGGCGTGATGCAGAGCTCGATTCGGCTAAGGCCAGTTCCACCAGTAATGGCAACAATGGCAATAGCGGCGGGGCGAATGTCTCTGCTGGAAAACGCCTTAAAACAGCAGCATGTAGAGATGATAATCACGCATCTAAAACAGAAGCAGAACCCAGATCTGGCAAGGCCGAGTGTAACTCCCAACCCCCACCAGAACAACCCAAACAGGATTACATTCATGTGCGAGCAAGAAGGGGCCAAGCAACTGATAGCCATAGTTTGGCTGAACGGGCTAGAAGAGAAAAGATAAGTGACAGAATGAAAATTCTTCAGGATTTGGTCCCTGGGTGTAATAAGGTCATTGGAAAAGCACTTGTACTTGATGAGATAATAAATTACATTCAATCGCTTCAGCACCAGGTTGAGTTCTTGTCAATGAAGCTTGAAGCAGTTAATTCCAGAGTTAGTCCTGGCATTGAAGTGTTTCCTCCTAAAGATTATGGTCAGCAGACATTCGATACAACTGGTGTTGCGTTTGGTTCACAAGCAACAAGAGAATACAGCAGCCGTGGCCCATCGCCAGAATGGCTACACATGCAGATCGGTGGGGGCTTCGAAAGAACGACATAG 885 47.91 MDPPTLMNQGSFPNDANANANATAYNLSEIWQFPINGGTGVEESGGGLGLRMAQFAHNLGQFGEISMENPEVSRGDPVSQRVVGHGHGGSKKRRDAELDSAKASSTSNGNNGNSGGANVSAGKRLKTAACRDDNHASKTEAEPRSGKAECNSQPPPEQPKQDYIHVRARRGQATDSHSLAERARREKISDRMKILQDLVPGCNKVIGKALVLDEIINYIQSLQHQVEFLSMKLEAVNSRVSPGIEVFPPKDYGQQTFDTTGVAFGSQATREYSSRGPSPEWLHMQIGGGFERTT 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4633152 4636423 + Carg17628-RA Car12g00674 158290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00674 294 MobiDBLite consensus disorder prediction 101 120 - -
Car12g00674 294 MobiDBLite consensus disorder prediction 126 145 - -
Car12g00674 294 Pfam Helix-loop-helix DNA-binding domain 176 223 IPR011598 GO:0046983
Car12g00674 294 Coils Coil 219 239 - -
Car12g00674 294 MobiDBLite consensus disorder prediction 68 160 - -
Car12g00674 294 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 172 222 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00154 Car-Chr10:742369 Car12g00674 Car-Chr12:4633152 3.87E-88 dispersed
Car11g00126 Car-Chr11:713031 Car12g00674 Car-Chr12:4633152 6.66E-91 dispersed
Car12g00674 Car-Chr12:4633152 Car06g01366 Car-Chr6:9828555 1.48E-48 dispersed
Car12g00674 Car-Chr12:4633152 Car05g00834 Car-Chr5:8227632 2.94E-150 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4445 PF00010 HLH 1.20E-08 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00674 - - csv:101209222 438.343