Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00675 ATGTCGTTGAGTAGACCCAGCCCGTCCACAAACACAGGAGGATCTTCCTCCTCCTCCTCCTCTTCACAATCAAGACACACTTCAAGAATTCTCACTCAAACCTCCATAGATGCAAAGCTCCACTCCCACTTCCAACACTCCGCTTCTTCCTTCGACTACTCTTCTTCAATCCATCTCACAGCCAACCCACCATCAACCACCACCACCCCCACCACCACCGCATACCTCCACCACATCCAACGCTCCAACCTCATCCAACCCTTCGGCTGCCTCATAGCCCTCCACCCAACCACCCACAAACTCATCGCCTTCAGCCAAAACGCCCCTGAATTCCTCACCACAGTCTCCCACACCGTCCCCACCATCTCCGACCGCCCTGTCCTCGCCTTTGGCACCACCCTCCATTCCATCTTCACCCCTCCCACCGCCACAGCCCTCCTCAAAGCTCTAGCCTTTCCCGACGTCACTCTCCTCAACCCCATTCTCGTCCACTCCAAATCCTCACAAAAACCCTTCTACGCCATTCTCCACCGTGTCACCGGTAGCCTCATCATCGACTTCGAACCCGTCAACCCCGACGAAGTCCCCGTCACCGCAGCCGGTGCTCTCCAATCATATAAACTCGCAGCCAAAGCCATCACTCGCCTCCAAGCTCTCCCTAGTGGAAGCATGGCCAGGCTTTGTGACACCATGGTTCAAGAAGTGTTTGAACTCACAGGATACGATCGAGTCATGGCATATAAATTCCATGATGATGATCATGGGGAGGTGTTCTCTGAGGTTACAAAGCCTGGACTTGACCCATATCTTGGATTGCATTATCCAGCCACTGACATCCCACAAGCTGCAAGGTTCTTATTCATGAAGAACAAGGTTAGAATGATTGTGGACTGCAAAGCCAAGCATGTCAAGGTGATTCAAGACCCAAATCTTGAGTTTGACTTGACATTATGTGGGTCAACATTGAGAGCTCCTCATAGTTGCCATTTACAATATATGGAGAATATGGATTCAATTGCATCTTTAGTTATGGCAATTGTGGTGAATGAGGAAGAACATGAAGAACAATTTGATCATAAGAACAAGAGAAAAAGGTTATGGGGTTTGGTGGTTTGTCATAACACAACTCCAAGATTTGTTCCCTTTCCTCTTAGATATGCATGTGAATTTCTAGCTCAAGTTTTTGCAATTCATGTCAACAAAGAATTGGAATTGGAGAATCAAATTTTGGAGAAGAACATCTTAAGAACTCAAACGCTTTTGTGTGATATGTTGATGCGTGATGCACCATTAGGGATTGTGTCTAGGAGCCCTAATATAATGGATCTTGTGAAGTCAGATGGGGCTGCATTGTTGTACAATGATAAGGTATGGAGATTAGGGATGACTCCTAATGATTTTGAGCTTCATGATATTGCTTCATGGATTTTGGAGTATCATGTGGATTCGACTGGATTGAGTACGGATAGCTTGTACGATGCGGGGTATCATGGCGCGGTTTCTCTAGGAGACGGCGTGTGTGGGATGGCGGCGGTGAGGCTAGGTTGCAACGACATGATTTTTTGGTTCCGATCGCACGCTGCATCGGAGATTAGGTGGGGCGGGGCAAAGCATGAGGCGGGTGAGAAGGATGATGGAAGGAGAATGCATCCTAGGTCATCTTTCAAGGCTTTTCTTGAAGTGGTTAAGACAAGGAGTTTGCCTTGGAAGGACTTTGAAATGGATGCTATTCATTCTTTGCAGCTTATACTAAGAAACACTTATAAAGATAAAGAGATTAATAAGAGTTCAATACAATCAACACTTAGTGACCTGAAAATTGATGGGAGGCAAGAGATTGAATCAGTGACATGTGAGATGGTGAGGTTGATTGAAACGGCTAGTGTTCCAATTTTGGCTGTTGATGTGGATGGGCTTGTTAATGGGTGGAACTCAAAAATTGCTGAATTGACTGGAATTTGTGTTGACAAGGCTATTGGCAAGCATTTGTTGACACTGGTGGAAGATTCTTCGTTGGAAGCTGTGAAGAAGATGTTGTTCTTGGCATTGCAAGGCCAAGAGGAGAAAAACGTCCAATTTGAGATAAAAACACAAGGCTCACACATGGAATCAAGCTCAATCAGCCTAATAGTAAATGCATGTGCAAGCAAAGACTTGTGTGAGAACGTTGTGGGAGTATGCTTCGTAGCACAAGACATCACCCATGAAAAGAAAGTGATGGACAAGTTCACAAAATTACAAGGCGATTACAAAGCCATAGTACAAAACCCCAACCCACTAATCCCTCCAATATTTGGGGTAGACGAATTCGGTTGGTGCACTGAGTGGAACTTAGCAATGGCAAATCTAAGTGGATGGTCAAGAGAAGAAGTGCTGAACAAGATGCTTTTGGGGGAAGTTTTTGGGTCATGCTGCCATGTAAAGAACCAAGAAGCCTTTGTGAATCTTGGGATTGTTTTGAACAATGCCATGAGTGGCCAAGATTCTGATAAGATATCATTTGGGTTCTTTGCAAGAGATGGGATGTTTGTGGAATGTCTTCTTTGTGTGAATAAGATAATGGATAGAGATGGGGAAGTGATTGGGGTTTTTTGCTTCTTGCAGCTTGCTAGCCAAGAGCTGCAACAAGCTTTGAATGTTCAAAAGTTGTGTGAGAGAACGGCTTTGAAAAGGTTGAAGGCTTTGGGATATATTAAGAGGCAGATCCAAAATCCTCTTTGTGGGATTGTTTTTTCGAGTAAGATGTTGGAGAGATCTCAGTTGGGTGATGAACAGAACCAGCTTTTGCTTAATAGTGGTGATTGTCAAAGGCAGATCTTTAAGGTTCTTCATGATTCGGATGATCTTGATAAGATTATTGAAGGCTTCATTGATTTAGAAATGGTTGAGTTCTCATTACACGAAGCATTAGTGGTATCAATTAGTCAAGTAATGATGAAGAGCAAAGGCAAAGGTATCCAAATAGTAAACGAGGTAGCAGAAGAGATCATGTCCGAAACCTTATATGGAGACAGTTTGAGACTTCAACAAGTAATGGCTGATTTCTTGTTGATATCAGTAAATTACGCACCAACAGGAAGCAGCATTATGGTTTCAACAAATATGACAAAGGATGAATCAGGGAAGTCAGTGAATCTTGTGCATGTGGAGTTCAGGATAACATATGTCGGTGGTGGCATGCCAGAATCGTTGTTGAATGAGATGTTTGGGAATGATGAGGAGGCGTCTGAAGAAGGTTTTAGCCTTCTGGTGAGTGGAAAGTTGGTGAAGTTGATGAATGGAGAGGTGAGATATGTGAGGGAAGCAGCCAATTCAACCTTCATCATAACTCTTCAGCTTGCTGCAGCTCATAAATAG 3357 44.27 MSLSRPSPSTNTGGSSSSSSSSQSRHTSRILTQTSIDAKLHSHFQHSASSFDYSSSIHLTANPPSTTTTPTTTAYLHHIQRSNLIQPFGCLIALHPTTHKLIAFSQNAPEFLTTVSHTVPTISDRPVLAFGTTLHSIFTPPTATALLKALAFPDVTLLNPILVHSKSSQKPFYAILHRVTGSLIIDFEPVNPDEVPVTAAGALQSYKLAAKAITRLQALPSGSMARLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVFSEVTKPGLDPYLGLHYPATDIPQAARFLFMKNKVRMIVDCKAKHVKVIQDPNLEFDLTLCGSTLRAPHSCHLQYMENMDSIASLVMAIVVNEEEHEEQFDHKNKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELENQILEKNILRTQTLLCDMLMRDAPLGIVSRSPNIMDLVKSDGAALLYNDKVWRLGMTPNDFELHDIASWILEYHVDSTGLSTDSLYDAGYHGAVSLGDGVCGMAAVRLGCNDMIFWFRSHAASEIRWGGAKHEAGEKDDGRRMHPRSSFKAFLEVVKTRSLPWKDFEMDAIHSLQLILRNTYKDKEINKSSIQSTLSDLKIDGRQEIESVTCEMVRLIETASVPILAVDVDGLVNGWNSKIAELTGICVDKAIGKHLLTLVEDSSLEAVKKMLFLALQGQEEKNVQFEIKTQGSHMESSSISLIVNACASKDLCENVVGVCFVAQDITHEKKVMDKFTKLQGDYKAIVQNPNPLIPPIFGVDEFGWCTEWNLAMANLSGWSREEVLNKMLLGEVFGSCCHVKNQEAFVNLGIVLNNAMSGQDSDKISFGFFARDGMFVECLLCVNKIMDRDGEVIGVFCFLQLASQELQQALNVQKLCERTALKRLKALGYIKRQIQNPLCGIVFSSKMLERSQLGDEQNQLLLNSGDCQRQIFKVLHDSDDLDKIIEGFIDLEMVEFSLHEALVVSISQVMMKSKGKGIQIVNEVAEEIMSETLYGDSLRLQQVMADFLLISVNYAPTGSSIMVSTNMTKDESGKSVNLVHVEFRITYVGGGMPESLLNEMFGNDEEASEEGFSLLVSGKLVKLMNGEVRYVREAANSTFIITLQLAAAHK 1118
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4646763 4652419 + Carg17627-RA Car12g00675 158291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00675 1118 ProSiteProfiles PAS repeat profile. 616 686 IPR000014 -
Car12g00675 1118 Pfam PAS fold 619 733 IPR013767 GO:0006355
Car12g00675 1118 Pfam PAS fold 749 868 IPR013767 GO:0006355
Car12g00675 1118 Pfam Phytochrome region 416 591 IPR013515 GO:0006355|GO:0009584
Car12g00675 1118 Pfam GAF domain 224 403 IPR003018 GO:0005515
Car12g00675 1118 Pfam PAS fold 74 190 IPR013654 GO:0006355
Car12g00675 1118 ProSitePatterns Phytochrome chromophore attachment site signature. 323 332 IPR013516 -
Car12g00675 1118 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1003 1113 IPR003594 -
Car12g00675 1118 ProSiteProfiles Histidine kinase domain profile. 897 1115 IPR005467 -
Car12g00675 1118 Coils Coil 400 420 - -
Car12g00675 1118 ProSiteProfiles PAS repeat profile. 749 827 IPR000014 -
Car12g00675 1118 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 223 393 IPR016132 -
Car12g00675 1118 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00675 Car-Chr12:4646763 Car19g00664 Car-Chr19:7904045 0 dispersed
Car12g00675 Car-Chr12:4646763 Car05g00833 Car-Chr5:8212317 4.64E-25 wgd
Car12g00675 Car-Chr12:4646763 Car05g00833 Car-Chr5:8212317 4.64E-25 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00675 K12120 - csv:101219585 1814.28