Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00675 ATGTCGTTGAGTAGACCCAGCCCGTCCACAAACACAGGAGGATCTTCCTCCTCCTCCTCCTCTTCACAATCAAGACACACTTCAAGAATTCTCACTCAAACCTCCATAGATGCAAAGCTCCACTCCCACTTCCAACACTCCGCTTCTTCCTTCGACTACTCTTCTTCAATCCATCTCACAGCCAACCCACCATCAACCACCACCACCCCCACCACCACCGCATACCTCCACCACATCCAACGCTCCAACCTCATCCAACCCTTCGGCTGCCTCATAGCCCTCCACCCAACCACCCACAAACTCATCGCCTTCAGCCAAAACGCCCCTGAATTCCTCACCACAGTCTCCCACACCGTCCCCACCATCTCCGACCGCCCTGTCCTCGCCTTTGGCACCACCCTCCATTCCATCTTCACCCCTCCCACCGCCACAGCCCTCCTCAAAGCTCTAGCCTTTCCCGACGTCACTCTCCTCAACCCCATTCTCGTCCACTCCAAATCCTCACAAAAACCCTTCTACGCCATTCTCCACCGTGTCACCGGTAGCCTCATCATCGACTTCGAACCCGTCAACCCCGACGAAGTCCCCGTCACCGCAGCCGGTGCTCTCCAATCATATAAACTCGCAGCCAAAGCCATCACTCGCCTCCAAGCTCTCCCTAGTGGAAGCATGGCCAGGCTTTGTGACACCATGGTTCAAGAAGTGTTTGAACTCACAGGATACGATCGAGTCATGGCATATAAATTCCATGATGATGATCATGGGGAGGTGTTCTCTGAGGTTACAAAGCCTGGACTTGACCCATATCTTGGATTGCATTATCCAGCCACTGACATCCCACAAGCTGCAAGGTTCTTATTCATGAAGAACAAGGTTAGAATGATTGTGGACTGCAAAGCCAAGCATGTCAAGGTGATTCAAGACCCAAATCTTGAGTTTGACTTGACATTATGTGGGTCAACATTGAGAGCTCCTCATAGTTGCCATTTACAATATATGGAGAATATGGATTCAATTGCATCTTTAGTTATGGCAATTGTGGTGAATGAGGAAGAACATGAAGAACAATTTGATCATAAGAACAAGAGAAAAAGGTTATGGGGTTTGGTGGTTTGTCATAACACAACTCCAAGATTTGTTCCCTTTCCTCTTAGATATGCATGTGAATTTCTAGCTCAAGTTTTTGCAATTCATGTCAACAAAGAATTGGAATTGGAGAATCAAATTTTGGAGAAGAACATCTTAAGAACTCAAACGCTTTTGTGTGATATGTTGATGCGTGATGCACCATTAGGGATTGTGTCTAGGAGCCCTAATATAATGGATCTTGTGAAGTCAGATGGGGCTGCATTGTTGTACAATGATAAGGTATGGAGATTAGGGATGACTCCTAATGATTTTGAGCTTCATGATATTGCTTCATGGATTTTGGAGTATCATGTGGATTCGACTGGATTGAGTACGGATAGCTTGTACGATGCGGGGTATCATGGCGCGGTTTCTCTAGGAGACGGCGTGTGTGGGATGGCGGCGGTGAGGCTAGGTTGCAACGACATGATTTTTTGGTTCCGATCGCACGCTGCATCGGAGATTAGGTGGGGCGGGGCAAAGCATGAGGCGGGTGAGAAGGATGATGGAAGGAGAATGCATCCTAGGTCATCTTTCAAGGCTTTTCTTGAAGTGGTTAAGACAAGGAGTTTGCCTTGGAAGGACTTTGAAATGGATGCTATTCATTCTTTGCAGCTTATACTAAGAAACACTTATAAAGATAAAGAGATTAATAAGAGTTCAATACAATCAACACTTAGTGACCTGAAAATTGATGGGAGGCAAGAGATTGAATCAGTGACATGTGAGATGGTGAGGTTGATTGAAACGGCTAGTGTTCCAATTTTGGCTGTTGATGTGGATGGGCTTGTTAATGGGTGGAACTCAAAAATTGCTGAATTGACTGGAATTTGTGTTGACAAGGCTATTGGCAAGCATTTGTTGACACTGGTGGAAGATTCTTCGTTGGAAGCTGTGAAGAAGATGTTGTTCTTGGCATTGCAAGGCCAAGAGGAGAAAAACGTCCAATTTGAGATAAAAACACAAGGCTCACACATGGAATCAAGCTCAATCAGCCTAATAGTAAATGCATGTGCAAGCAAAGACTTGTGTGAGAACGTTGTGGGAGTATGCTTCGTAGCACAAGACATCACCCATGAAAAGAAAGTGATGGACAAGTTCACAAAATTACAAGGCGATTACAAAGCCATAGTACAAAACCCCAACCCACTAATCCCTCCAATATTTGGGGTAGACGAATTCGGTTGGTGCACTGAGTGGAACTTAGCAATGGCAAATCTAAGTGGATGGTCAAGAGAAGAAGTGCTGAACAAGATGCTTTTGGGGGAAGTTTTTGGGTCATGCTGCCATGTAAAGAACCAAGAAGCCTTTGTGAATCTTGGGATTGTTTTGAACAATGCCATGAGTGGCCAAGATTCTGATAAGATATCATTTGGGTTCTTTGCAAGAGATGGGATGTTTGTGGAATGTCTTCTTTGTGTGAATAAGATAATGGATAGAGATGGGGAAGTGATTGGGGTTTTTTGCTTCTTGCAGCTTGCTAGCCAAGAGCTGCAACAAGCTTTGAATGTTCAAAAGTTGTGTGAGAGAACGGCTTTGAAAAGGTTGAAGGCTTTGGGATATATTAAGAGGCAGATCCAAAATCCTCTTTGTGGGATTGTTTTTTCGAGTAAGATGTTGGAGAGATCTCAGTTGGGTGATGAACAGAACCAGCTTTTGCTTAATAGTGGTGATTGTCAAAGGCAGATCTTTAAGGTTCTTCATGATTCGGATGATCTTGATAAGATTATTGAAGGCTTCATTGATTTAGAAATGGTTGAGTTCTCATTACACGAAGCATTAGTGGTATCAATTAGTCAAGTAATGATGAAGAGCAAAGGCAAAGGTATCCAAATAGTAAACGAGGTAGCAGAAGAGATCATGTCCGAAACCTTATATGGAGACAGTTTGAGACTTCAACAAGTAATGGCTGATTTCTTGTTGATATCAGTAAATTACGCACCAACAGGAAGCAGCATTATGGTTTCAACAAATATGACAAAGGATGAATCAGGGAAGTCAGTGAATCTTGTGCATGTGGAGTTCAGGATAACATATGTCGGTGGTGGCATGCCAGAATCGTTGTTGAATGAGATGTTTGGGAATGATGAGGAGGCGTCTGAAGAAGGTTTTAGCCTTCTGGTGAGTGGAAAGTTGGTGAAGTTGATGAATGGAGAGGTGAGATATGTGAGGGAAGCAGCCAATTCAACCTTCATCATAACTCTTCAGCTTGCTGCAGCTCATAAATAG 3357 44.27 MSLSRPSPSTNTGGSSSSSSSSQSRHTSRILTQTSIDAKLHSHFQHSASSFDYSSSIHLTANPPSTTTTPTTTAYLHHIQRSNLIQPFGCLIALHPTTHKLIAFSQNAPEFLTTVSHTVPTISDRPVLAFGTTLHSIFTPPTATALLKALAFPDVTLLNPILVHSKSSQKPFYAILHRVTGSLIIDFEPVNPDEVPVTAAGALQSYKLAAKAITRLQALPSGSMARLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVFSEVTKPGLDPYLGLHYPATDIPQAARFLFMKNKVRMIVDCKAKHVKVIQDPNLEFDLTLCGSTLRAPHSCHLQYMENMDSIASLVMAIVVNEEEHEEQFDHKNKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELENQILEKNILRTQTLLCDMLMRDAPLGIVSRSPNIMDLVKSDGAALLYNDKVWRLGMTPNDFELHDIASWILEYHVDSTGLSTDSLYDAGYHGAVSLGDGVCGMAAVRLGCNDMIFWFRSHAASEIRWGGAKHEAGEKDDGRRMHPRSSFKAFLEVVKTRSLPWKDFEMDAIHSLQLILRNTYKDKEINKSSIQSTLSDLKIDGRQEIESVTCEMVRLIETASVPILAVDVDGLVNGWNSKIAELTGICVDKAIGKHLLTLVEDSSLEAVKKMLFLALQGQEEKNVQFEIKTQGSHMESSSISLIVNACASKDLCENVVGVCFVAQDITHEKKVMDKFTKLQGDYKAIVQNPNPLIPPIFGVDEFGWCTEWNLAMANLSGWSREEVLNKMLLGEVFGSCCHVKNQEAFVNLGIVLNNAMSGQDSDKISFGFFARDGMFVECLLCVNKIMDRDGEVIGVFCFLQLASQELQQALNVQKLCERTALKRLKALGYIKRQIQNPLCGIVFSSKMLERSQLGDEQNQLLLNSGDCQRQIFKVLHDSDDLDKIIEGFIDLEMVEFSLHEALVVSISQVMMKSKGKGIQIVNEVAEEIMSETLYGDSLRLQQVMADFLLISVNYAPTGSSIMVSTNMTKDESGKSVNLVHVEFRITYVGGGMPESLLNEMFGNDEEASEEGFSLLVSGKLVKLMNGEVRYVREAANSTFIITLQLAAAHK 1118
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4646763 4652419 + Carg17627-RA Car12g00675 158291

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00675 1118 ProSiteProfiles PAS repeat profile. 616 686 IPR000014 -
Car12g00675 1118 Pfam PAS fold 619 733 IPR013767 GO:0006355
Car12g00675 1118 Pfam PAS fold 749 868 IPR013767 GO:0006355
Car12g00675 1118 Pfam Phytochrome region 416 591 IPR013515 GO:0006355|GO:0009584
Car12g00675 1118 Pfam GAF domain 224 403 IPR003018 GO:0005515
Car12g00675 1118 Pfam PAS fold 74 190 IPR013654 GO:0006355
Car12g00675 1118 ProSitePatterns Phytochrome chromophore attachment site signature. 323 332 IPR013516 -
Car12g00675 1118 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1003 1113 IPR003594 -
Car12g00675 1118 ProSiteProfiles Histidine kinase domain profile. 897 1115 IPR005467 -
Car12g00675 1118 Coils Coil 400 420 - -
Car12g00675 1118 ProSiteProfiles PAS repeat profile. 749 827 IPR000014 -
Car12g00675 1118 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 223 393 IPR016132 -
Car12g00675 1118 MobiDBLite consensus disorder prediction 1 29 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00675 K12120 PHYA; phytochrome A - csv:101219585 1814.28
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00675 Car-Chr12:4646763 Car19g00664 Car-Chr19:7904045 0 dispersed
Car12g00675 Car-Chr12:4646763 Car05g00833 Car-Chr5:8212317 4.64E-25 wgd
Car12g00675 Car-Chr12:4646763 Car05g00833 Car-Chr5:8212317 4.64E-25 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car16g01173 . 31 1206 Histidine Kinase Gene Family AT2G17820 65.6 0.0e+00 1466.1
Car06g00101 . 5 1218 Histidine Kinase Gene Family AT2G17820 63.1 0.0e+00 1424.1
Car04g02077 CST 19 981 Histidine Kinase Gene Family AT2G01830 72.0 0.0e+00 1324.3
Car04g00025 . 28 1008 Histidine Kinase Gene Family AT2G01830 70.5 0.0e+00 1321.6
Car15g00833 CST 20 1012 Histidine Kinase Gene Family AT2G01830 69.7 0.0e+00 1289.2
Car11g01462 . 280 1230 Histidine Kinase Gene Family AT2G01830 53.3 2.9e-274 942.2
Car20g00576 . 302 1245 Histidine Kinase Gene Family AT2G01830 53.4 5.4e-273 937.9
Car07g00626 . 283 1238 Histidine Kinase Gene Family AT2G01830 51.7 3.4e-267 918.7
Car08g00164 . 51 986 Histidine Kinase Gene Family AT2G01830 52.3 2.2e-266 916.0
Car01g01298 CCT 1 1000 Histidine Kinase Gene Family AT5G10720 57.2 1.7e-291 999.2
Car09g00334 CCT 1 996 Histidine Kinase Gene Family AT5G10720 56.6 1.9e-290 995.7
Car05g00833 . 117 1139 Histidine Kinase Gene Family AT1G09570 74.0 0.0e+00 1654.8
Car12g00675 . 24 1118 Histidine Kinase Gene Family AT1G09570 71.5 0.0e+00 1608.6
Car19g00664 . 18 1111 Histidine Kinase Gene Family AT1G09570 54.6 0.0e+00 1209.5
Car14g01399 CST 35 1120 Histidine Kinase Gene Family AT1G09570 54.3 0.0e+00 1194.1
Car06g01329 CST 31 1126 Histidine Kinase Gene Family AT1G09570 52.8 0.0e+00 1162.1
Car14g01399 CST 13 1061 Histidine Kinase Gene Family AT2G18790 79.0 0.0e+00 1669.1
Car06g01329 CST 30 1067 Histidine Kinase Gene Family AT2G18790 77.3 0.0e+00 1613.6
Car18g00423 CST 31 1051 Histidine Kinase Gene Family AT2G18790 59.4 0.0e+00 1228.8
Car13g00449 CST 63 1082 Histidine Kinase Gene Family AT2G18790 59.5 0.0e+00 1226.1
Car19g00664 . 26 1068 Histidine Kinase Gene Family AT2G18790 52.2 0.0e+00 1079.3
Car12g00675 . 28 1052 Histidine Kinase Gene Family AT2G18790 50.9 2.0e-305 1045.8
Car05g00833 . 137 1073 Histidine Kinase Gene Family AT2G18790 55.3 2.1e-299 1025.8
Car19g00664 . 12 1115 Histidine Kinase Gene Family AT5G35840 60.9 0.0e+00 1365.9
Car14g01399 CST 21 1122 Histidine Kinase Gene Family AT5G35840 52.8 0.0e+00 1148.7
Car06g01329 CST 31 1128 Histidine Kinase Gene Family AT5G35840 51.7 0.0e+00 1122.5
Car12g00675 . 24 1109 Histidine Kinase Gene Family AT5G35840 50.4 2.5e-313 1072.0
Car14g01399 CST 30 1122 Histidine Kinase Gene Family AT4G16250 77.1 0.0e+00 1708.7
Car06g01329 CST 34 1128 Histidine Kinase Gene Family AT4G16250 74.3 0.0e+00 1651.7
Car13g00449 CST 64 1144 Histidine Kinase Gene Family AT4G16250 57.8 0.0e+00 1265.8
Car18g00423 CST 38 1113 Histidine Kinase Gene Family AT4G16250 57.4 0.0e+00 1259.2
Car19g00664 . 26 1114 Histidine Kinase Gene Family AT4G16250 51.9 0.0e+00 1106.7
Car12g00675 . 27 1113 Histidine Kinase Gene Family AT4G16250 50.7 0.0e+00 1080.5
Car13g00449 CST 47 1145 Histidine Kinase Gene Family AT4G18130 63.2 0.0e+00 1371.3
Car18g00423 CST 15 1130 Histidine Kinase Gene Family AT4G18130 61.2 0.0e+00 1349.0
Car14g01399 CST 38 1120 Histidine Kinase Gene Family AT4G18130 58.9 0.0e+00 1273.8
Car06g01329 CST 42 1126 Histidine Kinase Gene Family AT4G18130 57.4 0.0e+00 1257.3
Car05g00833 . 140 1073 Histidine Kinase Gene Family AT4G18130 51.0 7.7e-262 901.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002826 1 3 1 1 1 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 1 3 2 1 56
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car12g00675 Car_Chr12 FPKM 12.879683 15.659397 16.232206 16.739416 8.616703 8.68913 7.71243 9.207246 8.866457 8.987555