Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00685 ATGCTGCGTCTTCAATGGCTGTCTTCTTCCTTGCTTCCGCCATTAAATCCCCCCGAGCTCTGCGCACAACCCTGTAAGAACCCCAGACGATGTGGTTTCAACTCCTCTCGCCAACTCTTCACTCTCACCGCTACACGAAAACCTTCTCCAAAATGCCAGTACGCGTCCTGGAACACGCAGCAGCCTGCCTTCGAACCAGCCTCTCAGACCGATTCATTTTCGCCACAAACAAGCGCCGGCGCTGCCGCGGCTTTGCCACCAAGGTTTTTTGTCGGTCATTCGATATACAAAGGAAAGGCTGCCCTGTCCATCGAGCCTAGGCCACCAGAGTTTACACCTATAGATTCGGGGGCGTTCAAAGTATCCAGGCAAGGATTTGTAATGCTTCAGCTTGCCCCTGCAGCTGGTGTTCGTCAATATGATTGGAGCAGAAAACAGGTATTTTCATTATCACTGACAGAATTGGGAAGTTTAGTCGCCCTTGGCCCACGGGAGTCTTGCGAATTTTTCCATGATCCCTACAAGGGAAAAAGTGATGAAGGGAAGGTCAGAAAGATACTAAAAGTCGAGCCTCTTCCAGATGGTTCTGGACATTTCTTCAATCTCAGCGTTCAGAACAAGCTAATCAACGTAGATGAGAGCATTTATATTCCCATCACCAAAGCCGAGTATACTGTACTTGTTGAGGCTTTCAAGTTTATCTTGCCGCACCTCATGGGATGGCATACCATTGCGAACACCACGATGAGGCCTGAAGATAGCAGCCGAGTAAATAACGCGAATCCCAGATATGGTGGTGAGTCGGGTGGCTTCGAATGGAGTAGATAG 828 49.28 MLRLQWLSSSLLPPLNPPELCAQPCKNPRRCGFNSSRQLFTLTATRKPSPKCQYASWNTQQPAFEPASQTDSFSPQTSAGAAAALPPRFFVGHSIYKGKAALSIEPRPPEFTPIDSGAFKVSRQGFVMLQLAPAAGVRQYDWSRKQVFSLSLTELGSLVALGPRESCEFFHDPYKGKSDEGKVRKILKVEPLPDGSGHFFNLSVQNKLINVDESIYIPITKAEYTVLVEAFKFILPHLMGWHTIANTTMRPEDSSRVNNANPRYGGESGGFEWSR 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4735071 4738147 + Carg17617-RA Car12g00685 158301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00685 275 MobiDBLite consensus disorder prediction 251 275 - -
Car12g00685 275 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY3, CHLOROPLASTIC 68 275 - -
Car12g00685 275 SUPERFAMILY ssDNA-binding transcriptional regulator domain 87 267 IPR009044 GO:0003677|GO:0006355
Car12g00685 275 Gene3D Transcriptional Coactivator Pc4; Chain A 80 254 IPR009044 GO:0003677|GO:0006355
Car12g00685 275 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 68 275 IPR013742 GO:0003697|GO:0006355|GO:0006952
Car12g00685 275 Pfam Whirly transcription factor 95 229 IPR013742 GO:0003697|GO:0006355|GO:0006952
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00805 Car-Chr1:5303055 Car12g00685 Car-Chr12:4735071 1.00E-47 dispersed
Car12g00685 Car-Chr12:4735071 Car05g00820 Car-Chr5:8087535 7.11E-160 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4446 PF08536 Whirly 2.40E-59 CL0609 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00685 - - mcha:111019296 434.876