Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00689 ATGTCGATCTCTTCTTTCTCCGATTGCTTCATTGACTCTCACCTACTCTGTGATGAGGAATCCTCCGGTATTTTTCCCGGAGAGTCGCTGGAGTACTTGACGGATTTTGAATCGGCGGATAGTAGTGAGGATTGTATCGCTGGTTTCATAGAAGATGAGAGGCACTTCGTTCCTGGAATTGATTACTTGTCGCGCTTTCGGTCTCAATCGCTGGACTCTTCCGCTAGAGCTGACTCTGTTGCATGGATTCTCAAGGTTCACTCATATTACGGTTTTCAACCACTCACCGCATACCTCTCCGTGAACTACTTGGATCGTTTCCTTTATTCTCGCCCCTTGCCGGAAACAAATGGGTGGAAGATGCAGCTCCTTTCAGTGGCTTGTTTGTCACTTGCAGCAAAAATGGAGGAACCCCTTGTTCCTTCTTTCCTGCATCTCCAGATTGGAGGAGCAAAACATATATTTGAGCCTAGAACAATACGTAGGATGGAGCTTCTTGTGCTGACAACTTTGAATTGGCGGCTGCGATCTGTAACACCCTTGAGCTTTATCGGATTCTTCGCCCACAAAGTTGATCCCAGCGGAACATTTTCCAGTTTTCTCAACTCACGCTCCACAGAAATTATTCTGTTCAATCTTCGAGACGCTAGCTTTCTCGAGTACTGGCCCTCCTGCATCGCTGCCGCAGCCTTACTATGTGCGGCAAATGAAATTCCAAATTTGACCCTGTTGAATCCTGAACACGCGGAGTCTTGGTGCAACGGACTGAGCAAAGAAAAAATTGGTGGGTGTTATCGGCTAATGCAGCAGCCGTTAACATCGAAAGTGATAGTGCCACTCCGAGTCCGAATCCGAGCTGGGTTGAGGTACATTGACTCATCATCCTCATCCTCCCCATCATCAACATTACCTTTTAAAAGAAGAAAATTGAATAATTGCGTGTACCCAGAAGATGACAAAGAAAATTCCAAACTTAGAGCAGAGCAGTAA 990 46.16 MSISSFSDCFIDSHLLCDEESSGIFPGESLEYLTDFESADSSEDCIAGFIEDERHFVPGIDYLSRFRSQSLDSSARADSVAWILKVHSYYGFQPLTAYLSVNYLDRFLYSRPLPETNGWKMQLLSVACLSLAAKMEEPLVPSFLHLQIGGAKHIFEPRTIRRMELLVLTTLNWRLRSVTPLSFIGFFAHKVDPSGTFSSFLNSRSTEIILFNLRDASFLEYWPSCIAAAALLCAANEIPNLTLLNPEHAESWCNGLSKEKIGGCYRLMQQPLTSKVIVPLRVRIRAGLRYIDSSSSSSPSSTLPFKRRKLNNCVYPEDDKENSKLRAEQ 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4772655 4776138 - Carg17613-RA Car12g00689 158305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00689 329 ProSitePatterns Cyclins signature. 76 107 IPR006671 -
Car12g00689 329 Pfam Cyclin, N-terminal domain 46 175 IPR006671 -
Car12g00689 329 Pfam Cyclin, C-terminal domain 178 272 IPR004367 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00808 Car-Chr5:7675842 Car12g00689 Car-Chr12:4772655 0 dispersed
Car12g00689 Car-Chr12:4772655 Car16g00277 Car-Chr16:1723405 5.26E-56 dispersed
Car12g00689 Car-Chr12:4772655 Car04g00277 Car-Chr4:1565989 1.78E-130 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00689 K18810 - csv:101210686 536.184