Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00703 ATGGCGGGGAAGCCTAGCTCGGTTTCCTTCAGGGTTCCGTACCGGAACCTCCAGGATGCGGAAGTAGAGATGGTGGCTGTCGATGAACAGCAGCTCCAAGGGATTGATCTCAATTCTCCTTCTTCTAGTAGATGTGCCAATGGAAGCCCAGACGGTTCGTCGTCAACGCCTCATGTTAGATCTACGCCAAATAGTTTGATTATCTTAATTCTCAGTTGTACTATCGCTGCCGGTGTTCAATTTGGTTGGGCATTACAGCTCTCCTTACTAACTCCCTATATTCAGACACTTGGAATCGAGCATGCATTTTCTTCATTTATTTGGCTTTGCGGTCCCATCACTGGTCTCGTGGTTCAACCATGTGTTGGTATATGGAGTGATAAGTGTTCTTCAAAATATGGAAGGAGGCGTCCCTTTATTCTTGCTGGGTCTTTAATGATAGCAGTTGCTGTGGTGTTGATTGGATTTTCTGCTGACATTGGGTATATACTAGGAGATACGAAGGAACATTGCAGAGTATATAAGGGTACACGAACAAGGGCAGCTATTATTTTTGTAATAGGCTTTTGGATGCTTGATCTTGCGAACAATACAGTGCAGGGTCCTGCCCGTGCTCTTCTAGCTGATTTATCAGGTCCTGATCAACACAATGTTGCAAATGCAGTATTTTGTTCATGGATGGCTGTTGGTAATATCCTAGGTTTTTCAGCAGGAGCTAGTGGAAACTGGCACAAATGGTTTCCTTTCCTTTTGAGTGATGCTTGCTGTGAAGCCTGTGGAAACCTTAAAGCAGCATTTCTTATCGCTGTGGTTTTTCTAACCATATGTACTCTTGTTACCATATATTTTGCCCATGAAGTTCCACTTACTGCTGTAGATCAACTACCACGTTTATCAGATTCTGCTCCTCTGTTGAATGGGAATGAACAAAGTAGTCCTAGTACTGTAAAATCGGAACTTAACAGTCCAAATGGGAGCAATGACAACTATGGCTATCAAAAAGATGTGAATTTGGAAATTTCAAAATCAATAATTGAGGAAAATCACAGTGAAAGTTATTACGATGGTCCTGCAACAGTGGTAGTCAAATTGCTAACCAGTTTAAGGCATTTACCACCGGCCATGCATTCAGTGCTTCTTGTGATGGCTCTTAGCTGGTTATCCTGGTTTCCCTTCTTCTTATTTGATACGGATTGGATGGGAAGGGAAGTGTACCATGGGGACCCAAAAGGAAGTTTGGCTGATGAACAGGTTTATGATCAGGGTGTCAGAGCAGGTGCATTTGGTTTGCTATTGAATTCTGTTGTTCTTGGTATCAGTTCTTTCTTCATAGAGCCGATGTGTCAGCGCATGGGAGCAAGACTTGTCTGGGCAATAAGCAACTTTATTGTGTTTGCATGCATGACGGGAACTACTATTATCAGTTTAATATCTGTCAGTCAATACTCTGAAGGAATTGAACACGTTATCGGAGGAAACTCAACAATAAAAAATGCTGCCTTGGCTGTTTTTGTTCTTCTTGGTTTTCCTCTTGCTATAACTTATAGCGTTCCCTTCTCTTTGACAGCAGAATTGACCGCTGATTCTGGTGGTGGCCAAGGATTGGCTATTGGAGTTCTCAATCTTGCAGTTATGATTGTATCACTGGGTGCTGGGCCATGGGATGCATTATTCAGTGGAGGAAACATTCCTGCATTTGCTTTGGCTTCTGTTTGTGCGCTTGCGGCTGGAGTTGTTGCGCTTCTTAGATTGCCTGATCACACCAACAGTTCTTTCAAATCCACAGGCTTTCATTTTGGTTGA 1803 42.93 MAGKPSSVSFRVPYRNLQDAEVEMVAVDEQQLQGIDLNSPSSSRCANGSPDGSSSTPHVRSTPNSLIILILSCTIAAGVQFGWALQLSLLTPYIQTLGIEHAFSSFIWLCGPITGLVVQPCVGIWSDKCSSKYGRRRPFILAGSLMIAVAVVLIGFSADIGYILGDTKEHCRVYKGTRTRAAIIFVIGFWMLDLANNTVQGPARALLADLSGPDQHNVANAVFCSWMAVGNILGFSAGASGNWHKWFPFLLSDACCEACGNLKAAFLIAVVFLTICTLVTIYFAHEVPLTAVDQLPRLSDSAPLLNGNEQSSPSTVKSELNSPNGSNDNYGYQKDVNLEISKSIIEENHSESYYDGPATVVVKLLTSLRHLPPAMHSVLLVMALSWLSWFPFFLFDTDWMGREVYHGDPKGSLADEQVYDQGVRAGAFGLLLNSVVLGISSFFIEPMCQRMGARLVWAISNFIVFACMTGTTIISLISVSQYSEGIEHVIGGNSTIKNAALAVFVLLGFPLAITYSVPFSLTAELTADSGGGQGLAIGVLNLAVMIVSLGAGPWDALFSGGNIPAFALASVCALAAGVVALLRLPDHTNSSFKSTGFHFG 600
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5114889 5120608 + Carg26231-RA Car12g00703 158319

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00703 600 MobiDBLite consensus disorder prediction 306 332 - -
Car12g00703 600 Pfam Major Facilitator Superfamily 78 394 IPR011701 GO:0022857|GO:0055085
Car12g00703 600 MobiDBLite consensus disorder prediction 36 59 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00703 K15378 SLC45A1_2_4; solute carrier family 45, member 1/2/4 - csv:101205348 1054.28
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00209 Car-Chr12:1317264 Car12g00703 Car-Chr12:5114889 1.09E-147 dispersed
Car12g00703 Car-Chr12:5114889 Car05g00798 Car-Chr5:7151294 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car01g00429 . 11 493 Sucrose Transporter Gene Family AT1G22710 62.7 8.9e-181 630.6
Car05g00778 . 26 501 Sucrose Transporter Gene Family AT1G22710 62.1 6.6e-176 614.4
Car12g00209 CCT 28 492 Sucrose Transporter Gene Family AT1G22710 51.2 4.9e-139 491.9
Car01g00429 . 12 480 Sucrose Transporter Gene Family AT2G14670 63.1 1.0e-178 623.6
Car05g00778 . 23 485 Sucrose Transporter Gene Family AT2G14670 62.4 3.6e-171 598.6
Car12g00209 CCT 27 492 Sucrose Transporter Gene Family AT2G14670 51.4 8.4e-136 481.1
Car01g00429 . 13 410 Sucrose Transporter Gene Family AT1G66570 61.0 1.6e-149 526.6
Car05g00778 . 23 415 Sucrose Transporter Gene Family AT1G66570 60.3 1.1e-142 503.8
Car05g00798 . 152 604 Sucrose Transporter Gene Family AT2G02860 67.3 1.2e-179 626.7
Car12g00703 . 152 600 Sucrose Transporter Gene Family AT2G02860 69.4 1.5e-179 626.3
Car01g00429 . 15 480 Sucrose Transporter Gene Family AT5G06170 60.3 2.1e-163 572.8
Car05g00778 . 17 485 Sucrose Transporter Gene Family AT5G06170 59.2 2.2e-160 562.8
Car01g00429 . 12 480 Sucrose Transporter Gene Family AT5G43610 62.6 1.8e-175 612.8
Car05g00778 . 23 485 Sucrose Transporter Gene Family AT5G43610 62.2 5.8e-169 591.3
Car12g00209 CCT 27 492 Sucrose Transporter Gene Family AT5G43610 50.7 1.1e-132 470.7
Car12g00209 CCT 24 499 Sucrose Transporter Gene Family AT1G09960 73.0 3.6e-206 714.9
Car05g00778 . 17 495 Sucrose Transporter Gene Family AT1G09960 50.7 9.0e-133 471.1
Car01g00429 . 19 480 Sucrose Transporter Gene Family AT1G09960 51.7 2.1e-129 459.9
Car01g00429 . 5 496 Sucrose Transporter Gene Family AT1G71880 59.9 8.1e-174 607.4
Car05g00778 . 23 501 Sucrose Transporter Gene Family AT1G71880 59.7 4.6e-169 591.7
Car12g00209 CCT 27 503 Sucrose Transporter Gene Family AT1G71880 51.2 4.3e-135 478.8
Car01g00429 . 13 485 Sucrose Transporter Gene Family AT1G71890 59.6 8.7e-168 587.4
Car05g00778 . 23 501 Sucrose Transporter Gene Family AT1G71890 58.7 6.9e-165 577.8
Car01g00429 . 5 496 Sucrose Transporter Gene Family AT1G71880 59.9 8.1e-174 607.4
Car05g00778 . 23 501 Sucrose Transporter Gene Family AT1G71880 59.7 4.6e-169 591.7
Car12g00209 CCT 27 503 Sucrose Transporter Gene Family AT1G71880 51.2 4.3e-135 478.8
Car01g00429 . 11 493 Sucrose Transporter Gene Family AT1G22710 62.7 8.9e-181 630.6
Car05g00778 . 26 501 Sucrose Transporter Gene Family AT1G22710 62.1 6.6e-176 614.4
Car12g00209 CCT 28 492 Sucrose Transporter Gene Family AT1G22710 51.2 4.9e-139 491.9
Car05g00798 . 152 604 Sucrose Transporter Gene Family AT2G02860 67.3 1.2e-179 626.7
Car12g00703 . 152 600 Sucrose Transporter Gene Family AT2G02860 69.4 1.5e-179 626.3
Car12g00209 CCT 24 499 Sucrose Transporter Gene Family AT1G09960 73.0 3.6e-206 714.9
Car05g00778 . 17 495 Sucrose Transporter Gene Family AT1G09960 50.7 9.0e-133 471.1
Car01g00429 . 19 480 Sucrose Transporter Gene Family AT1G09960 51.7 2.1e-129 459.9
Car01g00429 . 13 485 Sucrose Transporter Gene Family AT1G71890 59.6 8.7e-168 587.4
Car05g00778 . 23 501 Sucrose Transporter Gene Family AT1G71890 58.7 6.9e-165 577.8
Car01g00429 . 12 480 Sucrose Transporter Gene Family AT5G43610 62.6 1.8e-175 612.8
Car05g00778 . 23 485 Sucrose Transporter Gene Family AT5G43610 62.2 5.8e-169 591.3
Car12g00209 CCT 27 492 Sucrose Transporter Gene Family AT5G43610 50.7 1.1e-132 470.7
Car01g00429 . 13 410 Sucrose Transporter Gene Family AT1G66570 61.0 1.6e-149 526.6
Car05g00778 . 23 415 Sucrose Transporter Gene Family AT1G66570 60.3 1.1e-142 503.8
Car01g00429 . 12 480 Sucrose Transporter Gene Family AT2G14670 63.1 1.0e-178 623.6
Car05g00778 . 23 485 Sucrose Transporter Gene Family AT2G14670 62.4 3.6e-171 598.6
Car12g00209 CCT 27 492 Sucrose Transporter Gene Family AT2G14670 51.4 8.4e-136 481.1
Car01g00429 . 15 480 Sucrose Transporter Gene Family AT5G06170 60.3 2.1e-163 572.8
Car05g00778 . 17 485 Sucrose Transporter Gene Family AT5G06170 59.2 2.2e-160 562.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005106 1 2 1 1 1 1 2 1 1 1 0 1 2 1 1 2 1 2 1 1 1 1 2 1 1 1 2 4 3 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car12g00703 Car_Chr12 FPKM 9.853461 12.116369 7.899881 7.800126 12.717803 11.902667 12.31086 31.044788 30.791595 30.70278