Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00733 ATGGCCATGGCTATGGCTACGGCCCATCACAGAGAGAGTGGCGATGGGGGTATCGATGGCCACCTTGATAGCACCGGGAAGTATGTCCGTTACACGACGGAGCAAGTGGAAGCTCTTGAGCGAGTTTATGCGGAATGTCCTAAACCGAGCTCTTTGCGGCGGCAGCAGCTAGTTCGTGATTGCCCCATTTTGGCTAACATCGAGCCAAAGCAGATCAAAGTCTGGTTCCAGAACCGCAGGTGTAGAGAGAAACAGAGGAAAGAGGCTTCTCGTTTACAGTCATTGAATAGTAAATTGACGGCCATGAACAAGCTGTTGATGGAGGAGAACGATAGGTTACAGAAACAAGTGTCTCAGCTCGTTTGTGAGAATGGGTCTATGCGACAACATTTGCAAACTGCTAACGCACCAGCAGCACCAATTACTGATGCAAGCTGTGACACAGTGGCTACTGCCCCTCAGCATTCACTTAGAGATGCTAGTAGCCCTGCTGGACTCCTGTCTATTGCAGAGGAGATTTTGGCAGCCTTCCTGTCAAAGGCTACAGGAACTGCTATCGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCGGTGGGAATCTTCGCCGTTTCACAGAGTTGCAGTGGAGTAGCGGCTCGAGCCTGTGGTCTTGTTAGTTTAGAGCCCATGAAGATTGACGAGATCCTAAAAGATCGCCCATCTTGGTTTCGTGATTGCCGGAGTGTTGAAGTCTTTACGACGTTTCCCACTGGTAATGGTGGGACGATCGAACTTGTTTATACGCAGGTTTATGCTCCGACTACGTTAGCACCTGCACGAGATTTTTGGACTCTAAGATACACGAAAACTTTGGAAAATGGAAATCTTGCGGTTTGTGAGAGATCGCTGTCCGGGTCAGGCACGGGGCCTAATTCAGCTTCTGCTGCTCAGTTCGTGCGAGCTGAAATGTTTCCCAGTGGTTATTTGATTCGTCCTTGCGATGGCGGAGGTTCAATCATCCACATTGTAGATCACCTAAATCTCAAGCCTTGGAGCGTGCCAGAGGTCGTGAGACCACTTTACGAATCGTCGAAGGCCGTTGCTCAGAAAATGACTATAGCAGCTTTTCGCTACGTTAGGCAAGTGGCTCAAGAGACAAGTGGTGAAGTAGTATACAGTTTAGGCAGACAACCGGCCGTTCTTCGAACGTTTAGCCAAAGATTAAGCAGAGGATTTAATGAGGCTGTTAATGGATTTAATGATGATGGATGGTCTTTGATGAACTGTGATGGAGCTGAAGATGTGAGTCTTGCCATAAATTCAAGCAAGAATGTAAATACATCGTATGATCCTGTCAACTCTCTTGCATTCCATGCGGGTGTTCTTTGTGCAAAGGCTTCCATGCTTATACAAAATGTTCCTCCAATTGCTCTAATTCGTTTCTTGAGGGAACATCGATCAGAGTGGGCTGATTTCAATGTCGATGCGTATTCCGCTGCGTCGTTGAAAACTGGTTCGTATGTATACCCGAGCATGAGACCGACCAGGTTTACAGGGAGCCAAATTATCATGCCCCTCGGCCATACAATCGAACAAGAAGAGTTGCTTGAAGTTGTAAGGCTTGAGAGTCACCCTCTTGCTCAAGAAGATACTTTTATGTCCCGGGATGTTCATCTATTGCAGATGTGTACTGGAATCGATGAGAATGCTGTTGGTGCGTGTTCCGAACTTGTGTTTGCTCCGATCAATGAGATGTTTCCTGATGATGCTGTATTGCTGCCTTCTGGTTTTAGGATCATCCCTCTACATTCTGAAACAGGTGACTCAAAACATACATGGAAGAACTCGAATAGGACTATGGATCTCACTTCCAATCTTGAAGTTGGTTCATCTGCTTCACAAGATGCTGCTGCTGCTGCTGCATCAACATCTAACTTCAGATCAGTTTTGACTATTGCCTTCCAGTTCTCGTTTGGTAGCAACCTACAGGATGACGTTGCAGCTATGGCAAGGCAGTACGTTCGGAGTGTCGTTTCAGCTGTGCAGAGGGTTGCAGTTGCCATATCTCCCTCTGGATTAAGCTTGCCATCGGAACGACGGCTATCATCTGCTTGTCCAGAAGCTCTTACCCTGGCTCGATGGATCTGCTATAGCTACAGATGCCATACTGGAACAGAATTGGTGCTATCAGACAGTGTGGATGGTGACTCAGTGTTGAAACACCTATGGAATCATCAGGATGCAATTCTCTGTTGTTCCCTCAAGTCACTGCCCCCAGTGTTCATGTTTGCAAACCAAGCAGGCCTCGACATGTTGGAGACGACCTTGGTTGCGTTGCAAGACATCACTTTGGATAAGATTCTCGGCGACTCTGCCCTTAAGGCCTTCTCTGCTGATTTTTCCAATTTAATGCACCAGGGCTTTGCTTACATACCTGCTGGAATTTGCATATCGACAATGGGGCGCCATGCTTCCTTTGAACAAGCCATTGCATGGAAGGTTCTTGCAGAAGACGAGTCCACCGTGCACTGTCTTGCTTTCTCCTTCGTCAACTGGTCGTTCCTATGA 2556 47.61 MAMAMATAHHRESGDGGIDGHLDSTGKYVRYTTEQVEALERVYAECPKPSSLRRQQLVRDCPILANIEPKQIKVWFQNRRCREKQRKEASRLQSLNSKLTAMNKLLMEENDRLQKQVSQLVCENGSMRQHLQTANAPAAPITDASCDTVATAPQHSLRDASSPAGLLSIAEEILAAFLSKATGTAIDWVQMPGMKPGPDSVGIFAVSQSCSGVAARACGLVSLEPMKIDEILKDRPSWFRDCRSVEVFTTFPTGNGGTIELVYTQVYAPTTLAPARDFWTLRYTKTLENGNLAVCERSLSGSGTGPNSASAAQFVRAEMFPSGYLIRPCDGGGSIIHIVDHLNLKPWSVPEVVRPLYESSKAVAQKMTIAAFRYVRQVAQETSGEVVYSLGRQPAVLRTFSQRLSRGFNEAVNGFNDDGWSLMNCDGAEDVSLAINSSKNVNTSYDPVNSLAFHAGVLCAKASMLIQNVPPIALIRFLREHRSEWADFNVDAYSAASLKTGSYVYPSMRPTRFTGSQIIMPLGHTIEQEELLEVVRLESHPLAQEDTFMSRDVHLLQMCTGIDENAVGACSELVFAPINEMFPDDAVLLPSGFRIIPLHSETGDSKHTWKNSNRTMDLTSNLEVGSSASQDAAAAAASTSNFRSVLTIAFQFSFGSNLQDDVAAMARQYVRSVVSAVQRVAVAISPSGLSLPSERRLSSACPEALTLARWICYSYRCHTGTELVLSDSVDGDSVLKHLWNHQDAILCCSLKSLPPVFMFANQAGLDMLETTLVALQDITLDKILGDSALKAFSADFSNLMHQGFAYIPAGICISTMGRHASFEQAIAWKVLAEDESTVHCLAFSFVNWSFL 851
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6939343 6944704 + Carg27562-RA Car12g00733 158349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00733 851 Pfam START domain 169 376 IPR002913 GO:0008289
Car12g00733 851 ProSiteProfiles 'Homeobox' domain profile. 22 86 IPR001356 GO:0003677
Car12g00733 851 ProSiteProfiles START domain profile. 159 387 IPR002913 GO:0008289
Car12g00733 851 Pfam Homeodomain 28 85 IPR001356 GO:0003677
Car12g00733 851 Coils Coil 92 123 - -
Car12g00733 851 Pfam MEKHLA domain 706 850 IPR013978 -
Car12g00733 851 MobiDBLite consensus disorder prediction 1 22 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car07g00055 Car-Chr7:353870 Car12g00733 Car-Chr12:6939343 0 dispersed
Car12g00733 Car-Chr12:6939343 Car17g00717 Car-Chr17:6541955 0 dispersed
Car20g00429 Car-Chr20:2411433 Car12g00733 Car-Chr12:6939343 6.62E-105 dispersed
Car12g00733 Car-Chr12:6939343 Car02g00641 Car-Chr2:4832170 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4448 PF01852 START 5.50E-46 CL0209 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00733 K09338 - cpap:110820480 1336.63